PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003401.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family DBB
Protein Properties Length: 198aa    MW: 21488.8 Da    PI: 5.9164
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003401.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21.1e-05446541
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  C+ + + e+   C  ++  lC  C ++ H        H +vp
  Aco003401.1  4 QCDVCARAEAAVLCCADEAALCWGCDDAVHAAnklagkHHRVP 46
                 7*****************************6688999977766 PP
2zf-B_box31.73.2e-105999337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 +++C+ ++ek   +fC +++ llC++C ++ H        H
  Aco003401.1 59 NPTCDICQEKAGYFFCLEDRALLCRNCDVSVHTAspyvssH 99
                 799****************************9555666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
CDDcd000217.48E-4345No hitNo description
SMARTSM003361.1E-6447IPR000315B-box-type zinc finger
SuperFamilySSF578452.7E-55397No hitNo description
PROSITE profilePS501199.28657104IPR000315B-box-type zinc finger
SMARTSM003369.4E-1457104IPR000315B-box-type zinc finger
PfamPF006432.8E-859100IPR000315B-box-type zinc finger
CDDcd000211.38E-762104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MKIQCDVCAR AEAAVLCCAD EAALCWGCDD AVHAANKLAG KHHRVPLLPP TTPPSAPTNP  60
TCDICQEKAG YFFCLEDRAL LCRNCDVSVH TASPYVSSHQ RFLITGVRVA LQHYLTNANN  120
NSSSSNTNNS SSSNCDKPLS SQPRSTSETA KKLRGDPTAS FGREEVEAFR SQWPWNEILE  180
NVDFDQYYGL SEPGSSS*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0918911e-35FP091891.1 Phyllostachys edulis cDNA clone: bphylf050h06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107577.11e-146B-box zinc finger protein 22-like
RefseqXP_020107579.11e-146B-box zinc finger protein 22-like
SwissprotQ9SYM22e-54BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A199UGI01e-143A0A199UGI0_ANACO; B-box zinc finger protein 22
STRINGGSMUA_Achr11P12670_0015e-83(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121512528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-49light-regulated zinc finger protein 1