PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003626.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 235aa    MW: 26191.6 Da    PI: 9.6159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003626.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.79.6e-49171411128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelv +yLk+kv + +l++  +i+evd+ k++Pw Lp    ++e+e yfF + + ky++g r+nrat sgyWkatgkd++++    +
  Aco003626.1  17 LPPGFRFHPTDEELVLQYLKRKVLSWPLPA-AIIPEVDLSKFDPWVLP---GGGEDERYFFNRVEAKYPNGIRSNRATVSGYWKATGKDRQIVGGrFN 110
                  79****************************.88***************...457889************************************97567 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy+gr p+g+ktdW+mheyrl
  Aco003626.1 111 QVVGMKKFLVFYQGRPPRGTKTDWIMHEYRL 141
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5913164IPR003441NAC domain
PROSITE profilePS5100556.41617164IPR003441NAC domain
PfamPF023658.1E-2618141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEKQSVVRHG GGGVVRLPPG FRFHPTDEEL VLQYLKRKVL SWPLPAAIIP EVDLSKFDPW  60
VLPGGGEDER YFFNRVEAKY PNGIRSNRAT VSGYWKATGK DRQIVGGRFN QVVGMKKFLV  120
FYQGRPPRGT KTDWIMHEYR LSGPESHNPA VSTNGWVLCR IFKKKRATTT EVEIEEQQTP  180
VNPAVFIGLM RRREHPSNPP SPSSSSSDSS CVTDLSDESA NGEETSSSCN RSAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-541516515166NO APICAL MERISTEM PROTEIN
1ut4_B5e-541516515166NO APICAL MERISTEM PROTEIN
1ut7_A5e-541516515166NO APICAL MERISTEM PROTEIN
1ut7_B5e-541516515166NO APICAL MERISTEM PROTEIN
3swm_A5e-541516518169NAC domain-containing protein 19
3swm_B5e-541516518169NAC domain-containing protein 19
3swm_C5e-541516518169NAC domain-containing protein 19
3swm_D5e-541516518169NAC domain-containing protein 19
3swp_A5e-541516518169NAC domain-containing protein 19
3swp_B5e-541516518169NAC domain-containing protein 19
3swp_C5e-541516518169NAC domain-containing protein 19
3swp_D5e-541516518169NAC domain-containing protein 19
4dul_A5e-541516515166NAC domain-containing protein 19
4dul_B5e-541516515166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6623352e-43KM662335.1 Ananas bracteatus clone 45988b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107327.11e-174NAC domain-containing protein 83-like
SwissprotQ9FY934e-72NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A199UQA01e-173A0A199UQA0_ANACO; NAC domain-containing protein 83
STRINGXP_008777977.11e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-71NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]