PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003635.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 698aa    MW: 76068.7 Da    PI: 5.9479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003635.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.89.5e-1283256961374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl.....fsev 87 
                  lv+lLl+cAea++++d  +a+++L +l+  +sp gd+mqR+a++f+ AL    +    ++l ++lp ++t++++            ++         v
  Aco003635.1 325 LVHLLLACAEAIAKDDYLAARRYLHHLHRVVSPVGDSMQRVASCFADALPLPAVPrRPPHLPDSLPGRSTRTSRiiyhdI----RCTTRwshilTAVV 418
                  68***********************************************99877658999*****999999888643331....33222334435568 PP

         GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                  +P++kf+h+taNqaI ea+ege+rvH++D+di qG QWpa+lqaLa+Rp+g+pslRiTgvg+    s+ +++etg+ La++A++l+vpfef++ +a r
  Aco003635.1 419 CPYVKFAHFTANQAIFEAFEGEDRVHVVDLDILQGYQWPAFLQALAARPGGAPSLRITGVGH----SAAAVSETGRHLAELAHSLRVPFEFHAAAAGR 512
                  **************************************************************....9**************************7777* PP

         GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                  ledl++++L+ + gEalaVn v +lh +     +       +L ++++  Pk+v++veqea+hn++sFl rfleal+yysa+fdsl+a+lp +s +r+
  Aco003635.1 513 LEDLRPRMLHRRVGEALAVNAVNRLHCVA--APH----LGPLLAMIRDQAPKIVTLVEQEASHNGPSFLGRFLEALHYYSAIFDSLDATLPGDSAARM 604
                  ***************************98..333....556********************************************************* PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  kvE+ l+g+ei+n+vacegaer +rhe+le+Wr+ +e  GF+ vpls +a++q +lll  +   dgyr+ e++g+l+lgW+dr+L+++SaWr
  Aco003635.1 605 KVEQYLFGPEIRNIVACEGAERMARHERLERWRKVMEGKGFHGVPLSANAVNQSRLLLGLYTnCDGYRLTEDNGCLLLGWQDRALIAASAWR 696
                  **************************************************************9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.467299675IPR005202Transcription factor GRAS
PfamPF035143.3E-125325696IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MGGLKSSGTS SVVKQKHPPA SPTASVSESN IVTSSDPEHL QPDQPERNDA IAIPELKFEL  60
DLGLEVQSPD NAMWDSLFAD VAGADFMIES PRRDYMVCSP RRDYMACSPK RENVTISSPK  120
RTFLMNNNSY SSYHNNNYAY VSGVHGLFGC TTQTTYLSPN HNKGKSLSPL HKVFNYSSSS  180
STSLLPLYAS SAEFVRGDES LLLPVVDAFL DEYKEGSNAE VGFDVPGSAA TSALPTLLEC  240
LSMPEMNQYG EDAVAAGEAA AGAQGGGEGT DHVYQNWELQ QLASCGGELA DVAKSEWADP  300
SYQDVLGAIV PPSDTEQEQD SGLELVHLLL ACAEAIAKDD YLAARRYLHH LHRVVSPVGD  360
SMQRVASCFA DALPLPAVPR RPPHLPDSLP GRSTRTSRII YHDIRCTTRW SHILTAVVCP  420
YVKFAHFTAN QAIFEAFEGE DRVHVVDLDI LQGYQWPAFL QALAARPGGA PSLRITGVGH  480
SAAAVSETGR HLAELAHSLR VPFEFHAAAA GRLEDLRPRM LHRRVGEALA VNAVNRLHCV  540
AAPHLGPLLA MIRDQAPKIV TLVEQEASHN GPSFLGRFLE ALHYYSAIFD SLDATLPGDS  600
AARMKVEQYL FGPEIRNIVA CEGAERMARH ERLERWRKVM EGKGFHGVPL SANAVNQSRL  660
LLGLYTNCDG YRLTEDNGCL LLGWQDRALI AASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-843176959377Protein SCARECROW
5b3h_D5e-843176959377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107007.10.0LOW QUALITY PROTEIN: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A199UQS30.0A0A199UQS3_ANACO; DELLA protein GAI1
STRINGXP_008791129.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-95RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]