PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003674.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 204aa MW: 22819.8 Da PI: 9.2487

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003674.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	82.7	3.6e-26	101	155	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fpr Ct++gC+vkk+v+r ++d+ +v++tYeg H+h+ Aco003674.1 101 LDDGYRWRKYGQKAVKNNKFPR----CTHQGCNVKKQVQRLSKDEGIVVTTYEGMHTHP 155 59*****************6....******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.0E-28	86	155	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-24	93	156	IPR003657	WRKY domain
PROSITE profile	PS50811	24.157	96	157	IPR003657	WRKY domain
SMART	SM00774	8.2E-33	101	156	IPR003657	WRKY domain
Pfam	PF03106	4.0E-20	102	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MENYSMLFPP QPPSYSYLTS HFPHQHIPAN NMVHDTRVLG SAGVLQGESN VGAAAEARDQ 60 ASKAARMEEG GAESEAKRRK GEKKVRKPRY AFQTRSQVDI LDDGYRWRKY GQKAVKNNKF 120 PRCTHQGCNV KKQVQRLSKD EGIVVTTYEG MHTHPIEKAR HVTIVVLYGS CKILAAELQP 180 PEPYLVCYGA EEEKGRYELD GVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-22	91	156	7	76	Probable WRKY transcription factor 4
2lex_A	5e-22	91	156	7	76	Probable WRKY transcription factor 4
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106540.1	1e-115	probable WRKY transcription factor 75
TrEMBL	A0A1Q3B880	1e-51	A0A1Q3B880_CEPFO; WRKY domain-containing protein
TrEMBL	A0A2H3Z463	1e-51	A0A2H3Z463_PHODC; probable WRKY transcription factor 75
STRING	XP_008808114.1	2e-52	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	6e-41	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Aco003674.1