PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco003723.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 265aa MW: 30350.3 Da PI: 4.9965

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003723.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	144	193	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +e+l++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl Aco003723.1 144 SNIGFEELRNYFYMPITKAAKEMNVGLTVLKKRCRELGIPRWPHRKMKSL 193 699*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.769	128	213	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-22	145	193	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MSTDVFDHAE DNEFVCVEEQ DIFEWPRMIH DDSLPQLLSE ADALALPKII DQFDDELSQL 60 CSSGIFSYQW YPSQTIDDVT IDDIDLDSFS WNNQSLPSNS DGDDPNKEVA VCKVIVPSSS 120 GGASISMREE RVVRRRATGR SRLSNIGFEE LRNYFYMPIT KAAKEMNVGL TVLKKRCREL 180 GIPRWPHRKM KSLSSLIHNV QELGKGSPDS EESIQKELEM LELHRQLMEE NPDVQLTERT 240 KKLRQACFKA NYKKRRALQH PCIL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020107315.1	0.0	protein RKD3-like
TrEMBL	A0A199VEV5	0.0	A0A199VEV5_ANACO; Protein RKD3
STRING	GSMUA_Achr4P08610_001	3e-68	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-42	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco003723.1