PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003777.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25257.5 Da    PI: 9.5483
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003777.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-183184356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k++++++eq++ Le  F ++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  Aco003777.1 31 KKRRLNDEQVKFLELSFGEERKLETGRKVQLAAELGLDPKQVAVWFQNRRARHK 84
                 56789***********************************************99 PP
2HD-ZIP_I/II115.72.7e-3731113284
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                  kkrrl++eqvk+LE sF ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+ktkq+E +y++Lk+a+da + ++++Le+ev
  Aco003777.1  31 KKRRLNDEQVKFLELSFGEERKLETGRKVQLAAELGLDPKQVAVWFQNRRARHKTKQIEDEYSKLKSAHDAAVLHKCHLENEV 113
                  9*******************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.0662686IPR001356Homeobox domain
SMARTSM003891.7E-162990IPR001356Homeobox domain
SuperFamilySSF466891.14E-163093IPR009057Homeodomain-like
CDDcd000865.95E-153187No hitNo description
PfamPF000461.2E-153184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-173293IPR009057Homeodomain-like
PRINTSPR000313.9E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000313.9E-66682IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDDVLRTGET RRRTRRRRKR ARGEGSGEAS KKRRLNDEQV KFLELSFGEE RKLETGRKVQ  60
LAAELGLDPK QVAVWFQNRR ARHKTKQIED EYSKLKSAHD AAVLHKCHLE NEVLASACLP  120
ACLPTIHHIN TNTTDRPLSA QVLKLKERLS EAEAEIRKLT AGITGASGGG GGGGGGSSSP  180
SSSFSTVTHR PLVNGEFGVE GETDFMYIYN DYTYNNYMMD LVGLYGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11119RRTRRRRKR
21533RRRKRARGEGSGEASKKRR
31733RKRARGEGSGEASKKRR
47886RRARHKTKQ
5166176SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6662921e-120KM666292.1 Ananas bracteatus clone 51572j microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105030.11e-101homeobox-leucine zipper protein HOX12-like isoform X1
RefseqXP_020105031.11e-101homeobox-leucine zipper protein HOX12-like isoform X2
RefseqXP_020105032.11e-101homeobox-leucine zipper protein HOX12-like isoform X3
SwissprotQ7XI858e-54HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A199V3811e-100A0A199V381_ANACO; Homeobox-leucine zipper protein HOX14
STRINGXP_008795628.16e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.17e-38homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]