PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003842.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 586aa    MW: 62563.5 Da    PI: 9.2389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003842.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33303358258
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                  dDgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkkvers  d++++ei+Y+g+Hnh
  Aco003842.1 303 DDGYNWRKYGQKMVKGSEYPRSYYKCTNPNCPVKKKVERSV-DGQITEIIYKGQHNH 358
                  8****************************************.*************** PP
2WRKY105.72.3e-33468526159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dp++v++tYeg+Hnh+
  Aco003842.1 468 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASTDPRAVITTYEGKHNHD 526
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29297360IPR003657WRKY domain
SuperFamilySSF1182907.98E-26300361IPR003657WRKY domain
SMARTSM007741.2E-37302360IPR003657WRKY domain
PfamPF031061.5E-25303358IPR003657WRKY domain
PROSITE profilePS5081124.122303361IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-37454528IPR003657WRKY domain
SuperFamilySSF1182902.09E-29460528IPR003657WRKY domain
PROSITE profilePS5081138.251463528IPR003657WRKY domain
SMARTSM007744.5E-39468527IPR003657WRKY domain
PfamPF031065.5E-26469526IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MTILPLAIVV FFPIFLSRPF IRSRFPSQSA AISLHFLLHL LPFSSCTLAA LDFGDSRRNR  60
EGARRRPPRG RRSRCRARAA YESLFAGGGG GGGGGGGGVA AAAAEVSPGP LTLASSLFPD  120
ESESECRSFT QLLIGAMSSP VGGGGGGGGL ERRGGGGGGG GGGGGGGGLV RFGQNRPTSL  180
AVTQPPVFMI PPGLSPATLL DSPAFLSPMG NFGMSHQQAL AQVTAQAAHS QFKIHSQPEY  240
PSLLSIPATT CTIHHNTSAV NMAPIPDIST LSTNSNNTKL ESAEASQADQ RFQPAHVVDK  300
PADDGYNWRK YGQKMVKGSE YPRSYYKCTN PNCPVKKKVE RSVDGQITEI IYKGQHNHLR  360
PPNRRSKEGG ALQSESEEFN ENAEKTGISN DNLLASSIGK RDREPSYGTH EQLSGSSDSE  420
EVGGGEVKAD EADNEEPDAK RRNIATSSQR ALTEPRIIVQ TTSEVDLLDD GYRWRKYGQK  480
VVKGNPHPRS YYKCTYAGCN VRKHIERAST DPRAVITTYE GKHNHDVPAA RSSSHSIASA  540
SVSSSGLQNR GQNTHNQASL NRTDFGSRDH RAAAVLQLKE ENDIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-40303529878Probable WRKY transcription factor 4
2lex_A9e-40303529878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625941e-177KM662594.1 Ananas bracteatus clone 46433 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104924.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-140WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A199USJ90.0A0A199USJ9_ANACO; Putative WRKY transcription factor 3
STRINGXP_008790093.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-122WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]