PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004208.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 606aa    MW: 66745.5 Da    PI: 10.9058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004208.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64e-20437486255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  Aco004208.1 437 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARNLRG 486
                  69*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-20437494IPR016177DNA-binding domain
CDDcd000181.25E-26437493No hitNo description
SMARTSM003802.6E-34437500IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-30437493IPR001471AP2/ERF domain
PROSITE profilePS5103222.273437494IPR001471AP2/ERF domain
PRINTSPR003671.6E-9438449IPR001471AP2/ERF domain
PRINTSPR003671.6E-9460476IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MSCSRPVRVL EPSYRFRWRF NVTPNYSLTP PPLSTTTHPV RGQFGHFGTP ETPRLGDDDD  60
ADADAICVEI CASDASAALI RAHHDTKQPG PSGLNPRGGE GGGFYRKVLS LLINSSDRST  120
ARFGAVTKTD GGSSAIQCCS SSMMMVAHGT QKQQKQQHHY QGVVIRGIMR ELSPDRILKP  180
VGPTPPNPPL VTFTARGAGK VRSPNEDKRE KDVGVVADRR PPHLNPTRRP QAAWTHQIRR  240
RRNGMCVWEG DIRHDKGSRE GDRTTLLHTR ERPSRVHHYR RMHKDSGKRW RWWWWWWWFV  300
GRGVGTKTKR KGKEKRKEKG ERRAWAGAGF SGEVVATRAA AAAAAVTASP AAVPSTLSFD  360
LFPPGPTLLH TVLSAAPLGL SRTGGEECVA RGEEREQEQE QRQRQGQGQG QGHLSLAMAV  420
EMLRLGKDGF ASGKEVHFRG VRKRPWGRFA AEIRDPWKKT RKWLGTFDTA EEAARAYDEA  480
ARNLRGPKAK TNFGYVGSDA DIPSAIPVRG GAVSVAASAG APQVGWWRSA FAAAAPDGRD  540
LILGPPGASG GSDFSGYRFD AVEVVVRGEQ QKKKMMAAMA RKEEEANERR KKPFSFDLNL  600
PAPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-17437493259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-17437493562ATERF1
3gcc_A3e-17437493562ATERF1
5wx9_A1e-164384931571Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309317RKGKEKRKE
2571591KKKMMAAMARKEEEANERRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.18e-22ethylene responsive element binding factor 3