PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004374.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 339aa    MW: 37051.6 Da    PI: 6.569
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004374.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12199224126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Aco004374.1 199 YQPDICKDYKETGYCGYGDSCKFMHD 224
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9197229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878198226IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7198225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12199229IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10199224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.1E-13267320IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.81E-13278321No hitNo description
PfamPF139202.5E-8278319No hitNo description
SMARTSM001848.0E-5279316IPR001841Zinc finger, RING-type
CDDcd001628.87E-8279320No hitNo description
PROSITE profilePS5008910.675279317IPR001841Zinc finger, RING-type
PROSITE patternPS005180294303IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MADSGEVCNF FRKPTKNKNI RKRRAAESDD DDNDGGRGDP EPSLASSSSR SKRPMPADNK  60
LRFSSAPRSS SAAAAAAEPD DAAADGAGSG AVFHFESSGA VQVEHDSRAT ATLETETEFD  120
RDGRALRERT LKINQENMTG KSKPSSGGAG EELYKGMHGY TDHRAGFRRE QTVAAEKAGG  180
AHGPLRASSH IRVSARFDYQ PDICKDYKET GYCGYGDSCK FMHDRGDYKS GWQLEKEWEE  240
VEKARKRGLA MGGGGGDGDD GGAHDNDDDD DDDSVPFACF ICRQPFEDPV VTNCKHYFCE  300
HCALKHHSKN KKCFVCNKPT FGIFNAAHEI RKKMAQEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-63633813321RING finger protein 113A
5z58_M8e-63633813321RING finger protein 113A
6ff4_t8e-63633813321RING finger protein 113A
6ff7_t8e-63633813321RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087681.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ8GX841e-145C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A199W2H10.0A0A199W2H1_ANACO; Zinc finger CCCH domain-containing protein 1
STRINGXP_008789889.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-133C3H family protein