PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004459.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 992aa MW: 109147 Da PI: 6.5902

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004459.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.7	1.1e-28	641	692	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++k+AAk+Lgvc+T++KriCRq+GI RWP+Rki+++ Aco004459.1 641 AEKTISLEVLQQYFAGSLKNAAKSLGVCPTTMKRICRQHGILRWPSRKINKV 692 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.086	631	712	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-25	644	692	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-22	885	980	No hit	No description
SMART	SM00666	4.2E-21	896	978	IPR000270	PB1 domain
PROSITE profile	PS51745	20.981	896	978	IPR000270	PB1 domain
Pfam	PF00564	1.4E-15	897	977	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.0E-22	897	977	No hit	No description
CDD	cd06407	4.29E-33	897	977	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MESPPSPRPL PPPPPPPPLP RWCFLLRSMP GRDEEAAEAR GALMDLDDLD LDLDLDLDPD 60 PPSCLLPPRR PAPAADDAEW PFDALVSPSL LSSSSPPQSL LHLSFPSPPS PLCLFEDRPF 120 DASTSIAELA LYNPDTVSRN INGTNDKRRP LQLLVEEDNA DHTYIIKERM TQALRQFKES 180 TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSVALLQY RTVSLTYMFS VDGDNDGELG 240 LPGRVYRQKV PEWTPNVQYY SSKEYPRLCH ALNYNVRGTV ALPVFYPSAH TCVAVIELIM 300 TSQKINYAGE VGKVCKALEA VNLKSTEIQD HPSVQAKHPL SHVFVFLQGR FFLPNQICNK 360 GRQTALAEIL ETLAVVCEDH KLPLAQTWVP CRHRSVLAHG GGLRKSCSSF DGSCMGQVCM 420 STSDVAFHVI DAHIWRFRDA CVEHHLQKGQ GVAGIAFESR RPCFSEDITQ FSKTQYPLVH 480 YSRMCGLAGC FAVCLQSTFT GNDDYILEFF LPPECKNAGE QRVLLEAMII SMKRCFRSLK 540 VVADVELQEG ITLQSIDMLV IDNREFASGH PRASLECNFD KGFNGAGKLD NRVSDMPEKH 600 ILANGNAVNN GIVIEQNGSG TSSSSLANKN NKPSERRRGK AEKTISLEVL QQYFAGSLKN 660 AAKSLGVCPT TMKRICRQHG ILRWPSRKIN KVNRSLSKLK QVIESVDGAF TLPSLPCPLP 720 VAVGSLPSPS NVDKTNKTKE SEPLKPFTLH TERENKLSTR DTSPDNDGSG KKLFPHCSRS 780 GSSSEEGSSN THTSEGSCHA SPQNENVVSG PFNSTFLGPE LKPSCTLGLI NPNTNFICLN 840 TTAVEPQSPL NGMLVEDSGS SKYLKNLCPC AVEIPHDEHN VGPTSNNPTS MANSRVVTIK 900 ASYKDDIVRF RFTVAGNVTE LKDEIAKRLK LEVGMFDVKY LDDDPEWVLL ACNADLEECV 960 EIARLSGRHV VRLLVSDISA SLGSSCESSR G*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MESPPSPRPL PPPPPPPPLP RWCFLLRSMP GRDEEAAEAR GALMDLDDLD LDLDLDLDPD  60
PPSCLLPPRR PAPAADDAEW PFDALVSPSL LSSSSPPQSL LHLSFPSPPS PLCLFEDRPF  120
DASTSIAELA LYNPDTVSRN INGTNDKRRP LQLLVEEDNA DHTYIIKERM TQALRQFKES  180
TDQHLLVQVW APVKNGDRYV LTTSGQPFVL DHQSVALLQY RTVSLTYMFS VDGDNDGELG  240
LPGRVYRQKV PEWTPNVQYY SSKEYPRLCH ALNYNVRGTV ALPVFYPSAH TCVAVIELIM  300
TSQKINYAGE VGKVCKALEA VNLKSTEIQD HPSVQAKHPL SHVFVFLQGR FFLPNQICNK  360
GRQTALAEIL ETLAVVCEDH KLPLAQTWVP CRHRSVLAHG GGLRKSCSSF DGSCMGQVCM  420
STSDVAFHVI DAHIWRFRDA CVEHHLQKGQ GVAGIAFESR RPCFSEDITQ FSKTQYPLVH  480
YSRMCGLAGC FAVCLQSTFT GNDDYILEFF LPPECKNAGE QRVLLEAMII SMKRCFRSLK  540
VVADVELQEG ITLQSIDMLV IDNREFASGH PRASLECNFD KGFNGAGKLD NRVSDMPEKH  600
ILANGNAVNN GIVIEQNGSG TSSSSLANKN NKPSERRRGK AEKTISLEVL QQYFAGSLKN  660
AAKSLGVCPT TMKRICRQHG ILRWPSRKIN KVNRSLSKLK QVIESVDGAF TLPSLPCPLP  720
VAVGSLPSPS NVDKTNKTKE SEPLKPFTLH TERENKLSTR DTSPDNDGSG KKLFPHCSRS  780
GSSSEEGSSN THTSEGSCHA SPQNENVVSG PFNSTFLGPE LKPSCTLGLI NPNTNFICLN  840
TTAVEPQSPL NGMLVEDSGS SKYLKNLCPC AVEIPHDEHN VGPTSNNPTS MANSRVVTIK  900
ASYKDDIVRF RFTVAGNVTE LKDEIAKRLK LEVGMFDVKY LDDDPEWVLL ACNADLEECV  960
EIARLSGRHV VRLLVSDISA SLGSSCESSR G*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020088915.1	0.0	protein NLP3-like
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A199W4Y8	0.0	A0A199W4Y8_ANACO; Protein NLP3
STRING	OPUNC01G08520.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Aco004459.1