PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004632.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 227aa    MW: 25590.1 Da    PI: 10.2248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004632.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.52e-43191431128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrF+Ptdeelvv+yL++k+ + +l++  vi+e+d+  ++P+dLp  +   e e yfF+ r+ k+  g+r+ rat+sgyWkatgkd+++ls+ k+
  Aco004632.1  19 LPPGFRFRPTDEELVVHYLRRKAFSCPLPA-AVINEIDLGMCDPRDLPGGI---EGERYFFALREAKNLGGNRSCRATSSGYWKATGKDTPILSSkKN 112
                  79***************************9.89***************554...4589***********************************98677 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +lvg+k+tL+f++g+ p+  +tdW+mheyrl
  Aco004632.1 113 HLVGMKRTLTFHRGEPPRRARTDWIMHEYRL 143
                  78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-5415171IPR003441NAC domain
PROSITE profilePS5100551.66319170IPR003441NAC domain
PfamPF023656.3E-2520143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEKSVPRSTE HGVGVLLRLP PGFRFRPTDE ELVVHYLRRK AFSCPLPAAV INEIDLGMCD  60
PRDLPGGIEG ERYFFALREA KNLGGNRSCR ATSSGYWKAT GKDTPILSSK KNHLVGMKRT  120
LTFHRGEPPR RARTDWIMHE YRLAVPAKNN AIHSCSAQQK EWVVCRIFKK NRAGKTSGDN  180
TRIWRGDVRF THHVTRREDR IRSSPPSPSS SSSCVTDLSD EEEISC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-401717515170NO APICAL MERISTEM PROTEIN
1ut4_B2e-401717515170NO APICAL MERISTEM PROTEIN
1ut7_A2e-401717515170NO APICAL MERISTEM PROTEIN
1ut7_B2e-401717515170NO APICAL MERISTEM PROTEIN
3swm_A2e-401717518173NAC domain-containing protein 19
3swm_B2e-401717518173NAC domain-containing protein 19
3swm_C2e-401717518173NAC domain-containing protein 19
3swm_D2e-401717518173NAC domain-containing protein 19
3swp_A2e-401717518173NAC domain-containing protein 19
3swp_B2e-401717518173NAC domain-containing protein 19
3swp_C2e-401717518173NAC domain-containing protein 19
3swp_D2e-401717518173NAC domain-containing protein 19
4dul_A2e-401717515170NAC domain-containing protein 19
4dul_B2e-401717515170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088157.11e-168NAC domain-containing protein 83-like
SwissprotQ9FY938e-61NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A199W9Y81e-152A0A199W9Y8_ANACO; NAC domain-containing protein 83
STRINGXP_008777977.14e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-63NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]