PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004673.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 543aa    MW: 59748.2 Da    PI: 6.8733
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004673.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS112.36.6e-351743511162
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn..........sseelaalklfsev 87 
                  lv+lL++cAea + +d ++a+alL +l+  a  +g+++qR+a++f+++L+ rla  ++ + + ++ + ++s+             +++  al l +ev
  Aco004673.1 174 LVQLLIACAEAAACRDRAQASALLRELQSAAVVHGSAFQRVASCFVQGLSDRLALVQPlGAVGIVGAAAASSAAagdgygdgglRARREEALGLAYEV 271
                  689**************************************************98444233333322222222245688887776777777788**** PP

         GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRp..egppslRiTgvgspesgskeeleetg 162
                  +P+++f+h++aN a+lea+ege+ vH++D+++++Gl    QW  Ll+ La R+  + p ++RiTgvg       e+++e+g
  Aco004673.1 272 CPYMQFGHFAANAAMLEAFEGESVVHVVDLGMTMGLpgghQWRGLLDGLARRQppNLPRRVRITGVGL-GGAAVERMREIG 351
                  ********************************99755555************9767789*******98.223666666666 PP
2GRAS203.81e-62356541187374
         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                  e l+ e+Lrv+pgEal+Vn vlqlh +++es    +   +vL+++ +lsP+++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + +r+k
  Aco004673.1 356 EGLRAEQLRVEPGEALVVNTVLQLHCVVKESRGALN---AVLQTIHRLSPRLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAALPKYATKRAK 450
                  56889***********************88887777...9********************************************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vE++  ++ei+n+v+ceg +r+erhe+l +Wr+r+++aGF+pvpl+   ++qa+l l+  k    dgy+v ee+g+lvlgW+++p+++vS+W+
  Aco004673.1 451 VEQFHYAEEIKNIVSCEGPARVERHERLDQWRRRMSRAGFQPVPLKM--MAQARLWLADAKkkfCDGYTVAEEKGCLVLGWQSKPIIAVSCWK 541
                  *********************************************75..66777777665532669**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.491148520IPR005202Transcription factor GRAS
PfamPF035142.3E-32174351IPR005202Transcription factor GRAS
PfamPF035143.5E-60356541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSPGPYLHHH HPHPHHQKLQ LQLLPKLEEG SEAYAAVNGL LLQSNDAEDE AEEEEEEEEE  60
GKDAHHVNNG LMFLKRKKES CGYSYSHDYH NFLCKSSALL APPSSFPTWM PPEIEWRERK  120
KPRACGGSNG EPAMLQFRRE VEKLQRMVRA SEEACPVALS RFEGEEDGGG SVRLVQLLIA  180
CAEAAACRDR AQASALLREL QSAAVVHGSA FQRVASCFVQ GLSDRLALVQ PLGAVGIVGA  240
AAASSAAAGD GYGDGGLRAR REEALGLAYE VCPYMQFGHF AANAAMLEAF EGESVVHVVD  300
LGMTMGLPGG HQWRGLLDGL ARRQPPNLPR RVRITGVGLG GAAVERMREI GEGIVEGLRA  360
EQLRVEPGEA LVVNTVLQLH CVVKESRGAL NAVLQTIHRL SPRLLVLVEQ DSSHNGPFFL  420
GRFMEALHYY SAIFDSLDAA LPKYATKRAK VEQFHYAEEI KNIVSCEGPA RVERHERLDQ  480
WRRRMSRAGF QPVPLKMMAQ ARLWLADAKK KFCDGYTVAE EKGCLVLGWQ SKPIIAVSCW  540
KC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4918154026378Protein SCARECROW
5b3h_A2e-4918154025377Protein SCARECROW
5b3h_D2e-4918154025377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116122RERKKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088562.10.0DELLA protein RGL1-like
TrEMBLA0A199UK410.0A0A199UK41_ANACO; DELLA protein GAI1
STRINGXP_008799986.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.18e-65RGA-like 1