PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004737.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 431aa    MW: 49307.5 Da    PI: 8.7821
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004737.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.55.2e-2490189189
         FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                  +fYn YA ++GFs+rk++++k  k +g +t+  ++Cskeg++++++++          +++ +++ +  r+gCka+l++k+ + gkw+v+++++eHnH
  Aco004737.1  90 DFYNIYAFKTGFSIRKQSHYKAkKLEGMVTTLVYTCSKEGQSKRQTNEmgnnvassqtNRTPQKEFPFRRCGCKAHLRLKMVEGGKWMVMSFNKEHNH 187
                  6*******************99567899****************99999****9876545555566789***************************** PP

         FAR1  88 el 89 
                  +l
  Aco004737.1 188 DL 189
                  99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-2290190IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MELSRPINTS HEGEGASVIG SSNLEATNDE EDILGDETLL SVSIRGEREN DSYENQRNQQ  60
QQLEEMSQEE SAIDEPFLGQ IFSNAEKAKD FYNIYAFKTG FSIRKQSHYK AKKLEGMVTT  120
LVYTCSKEGQ SKRQTNEMGN NVASSQTNRT PQKEFPFRRC GCKAHLRLKM VEGGKWMVMS  180
FNKEHNHDLI VSPSKARFFR SHRSITNEQK EMINMLSEQN ISTSQIMSFL AAREGGMKNI  240
HFTRKDLSNA IVEQNRRLIG IDVATYKFVI QFEKIVSSRY KKEDEEEFKM KDGEATLWTL  300
DPIEERAREV YTKKVFADFR DQLKVLTGYR FVEVEKNTFK IVKDPPQSQC KGKGKPQRLK  360
PPAEKNAKKS RTCANCQKKG HNIKTCKEAK EKEASEHVRA PNPSSEVGRD GRGKPGEEEE  420
GNEQKMEDRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081479.13e-74protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020098475.13e-74protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A199VRY40.0A0A199VRY4_ANACO; Protein FAR1-RELATED SEQUENCE 11 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-23FAR1-related sequence 5