PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004759.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 179aa    MW: 19397.1 Da    PI: 10.3105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004759.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123958221
                 EETTTTEEESSHHHHHHHHH CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                 +C+ Cg++F ++  L  H+r
  Aco004759.1 39 PCSECGRRFASSKALFGHMR 58
                 5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3053865IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-53963No hitNo description
Gene3DG3DSA:3.30.160.605.3E-54060IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
PfamPF139123.9E-84062IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MPPLRFHPSS AVVAAPNMQG PKPDRPTAAA AVDEAVIPPC SECGRRFASS KALFGHMRCH  60
PERQWRGINP PPQFRHRTVG ASANAANAAN ADAFEFTEEE RAVAASLVML AGRRHRRRSR  120
APRRRDFCSR CSKEHESGVC RDSKACVIDL NMPPPPLSPR IESGEGVPST GLDLRLGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088439.11e-120formin-like protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-22C2H2-like zinc finger protein