PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004890.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HB-PHD

Protein Properties

Length: 704aa MW: 78582.9 Da PI: 4.8084

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004890.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.1	1.5e-13	563	606	13	56
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + L e Fe n+yp++ee+e LA++lgLt rqV+ WF N R k Aco004890.1 563 QKLVESFEANQYPTREEKESLAQELGLTFRQVSKWFENARHSFK 606 67899***********************************8765 PP
2	PHD	39.9	9.4e-14	230	285	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+kCl+++l +e++p g wlC+ C++k Aco004890.1 230 FCAKCGSkdVSVNNDIILCDGaCERGFHQKCLNPPLLTENIPPGdeGWLCPACDCK 285 69999543449***66****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.53E-15	220	288	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.5E-13	226	285	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.083	228	285	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	7.4E-11	230	283	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	5.5E-11	230	285	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	5.37E-28	230	282	No hit	No description
PROSITE pattern	PS01359	0	231	282	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00389	1.4E-12	551	612	IPR001356	Homeobox domain
CDD	cd00086	9.03E-12	555	606	No hit	No description
SuperFamily	SSF46689	7.7E-13	560	615	IPR009057	Homeodomain-like
Pfam	PF00046	6.2E-11	563	606	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.7E-14	563	610	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.058	565	608	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	583	606	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence Send to blast
MDNAAVPLVN SCSDKSSKHP EQDCKLECAI QESAELGRVN EGKHAKEAEL GKKVASGSEK 60 ADMSARKNSK KAVRKRKKLS QKIQGRRYPL RSSMDGVRVL RSMLNGKSET HVETPSSSVN 120 PVVKRRAKRG RAKRASNDEL SRTRKRIRYL LTRMNYEQNL IDAYSGEGWK GQSLEKIRPE 180 KELERAKSEI LRCKLRLRDT FKHLDTLISE GKFDESLFDS EGEISSEDIF CAKCGSKDVS 240 VNNDIILCDG ACERGFHQKC LNPPLLTENI PPGDEGWLCP ACDCKVDCID LLNESQGSDL 300 TIEDSWEKVF PEAAAIANGT ANYDMSNLPS DDSEDSDYDP SNPKTHSDDD KEEEEESSSA 360 DESDFTASSE GSGPSNPNPN KQYDYTGLPS DDSEDDDYDP DCPDPDKDSQ KEESNSDESD 420 FTSDSDEFCS EIVKASVGDE VSALPNDKPF DHHGEQRSIM EPELGQGSPL PNPGKRQREH 480 LDYKKLYDEA YGEASSDSSE DEDWSEKSIL KKGRKDDGED SVESPQSTEN QKRSRRVKGK 540 QKEDRSDLSA PSRERQYGRV FSQKLVESFE ANQYPTREEK ESLAQELGLT FRQVSKWFEN 600 ARHSFKVSGK EPSFTDPANS GAFIIPNQKI TSGRGRKVFE SNEEIPENST SYPDTPISSD 660 RGATCETGSN NGIKNDCRSS REFANSSRQK AIARELRKLK SGR*

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence Send to blast

MDNAAVPLVN SCSDKSSKHP EQDCKLECAI QESAELGRVN EGKHAKEAEL GKKVASGSEK  60
ADMSARKNSK KAVRKRKKLS QKIQGRRYPL RSSMDGVRVL RSMLNGKSET HVETPSSSVN  120
PVVKRRAKRG RAKRASNDEL SRTRKRIRYL LTRMNYEQNL IDAYSGEGWK GQSLEKIRPE  180
KELERAKSEI LRCKLRLRDT FKHLDTLISE GKFDESLFDS EGEISSEDIF CAKCGSKDVS  240
VNNDIILCDG ACERGFHQKC LNPPLLTENI PPGDEGWLCP ACDCKVDCID LLNESQGSDL  300
TIEDSWEKVF PEAAAIANGT ANYDMSNLPS DDSEDSDYDP SNPKTHSDDD KEEEEESSSA  360
DESDFTASSE GSGPSNPNPN KQYDYTGLPS DDSEDDDYDP DCPDPDKDSQ KEESNSDESD  420
FTSDSDEFCS EIVKASVGDE VSALPNDKPF DHHGEQRSIM EPELGQGSPL PNPGKRQREH  480
LDYKKLYDEA YGEASSDSSE DEDWSEKSIL KKGRKDDGED SVESPQSTEN QKRSRRVKGK  540
QKEDRSDLSA PSRERQYGRV FSQKLVESFE ANQYPTREEK ESLAQELGLT FRQVSKWFEN  600
ARHSFKVSGK EPSFTDPANS GAFIIPNQKI TSGRGRKVFE SNEEIPENST SYPDTPISSD  660
RGATCETGSN NGIKNDCRSS REFANSSRQK AIARELRKLK SGR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	78	RKNSKKAVRKRKKL
2	70	76	KAVRKRK
3	73	77	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM661525	0.0	KM661525.1 Ananas bracteatus clone 43859 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091779.1	0.0	homeobox protein HOX1A
Refseq	XP_020091780.1	0.0	homeobox protein HOX1A
Swissprot	P46605	1e-175	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A199VS95	0.0	A0A199VS95_ANACO; Homeobox protein HOX1A (Fragment)
STRING	XP_008780923.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-90	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Aco004890.1

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614]