PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004921.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 238aa MW: 25542.1 Da PI: 7.836

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004921.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.9	1.2e-41	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vh++FGasnv kll+++++ +reda++sl+yeA+ar++dPvyG+v+ i+ l+ +l+ql+++l+ +k Aco004921.1 8 PCAACKFLRRKCTQGCVFAPYFPPDQPNKFACVHRVFGASNVAKLLNDISPAQREDAVNSLAYEADARLKDPVYGCVAYISLLELRLRQLRVDLHNAK 105 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Aco004921.1 106 KE 107 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.992	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-41	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSSSSNSPCA ACKFLRRKCT QGCVFAPYFP PDQPNKFACV HRVFGASNVA KLLNDISPAQ 60 REDAVNSLAY EADARLKDPV YGCVAYISLL ELRLRQLRVD LHNAKKELAA YIGPAAFGPF 120 LPSAPAPPPQ FHHPQFQPPM MGLGLAAAAP QLMIRDHSQS QSQSQMVVDA QPMVVVAAAA 180 SDAAQREQEM FRTYDQQQQQ EELARLSSVY DARGVYNHAA QLGGGPTVAI AGSAGLA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	1	111	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	1	111	4	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091636.1	1e-172	LOB domain-containing protein 36-like
Refseq	XP_020091637.1	1e-172	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	3e-60	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A427A3W7	2e-74	A0A427A3W7_ENSVE; Uncharacterized protein
STRING	GSMUA_Achr6P04670_001	2e-73	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6143	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-59	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Aco004921.1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]