PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004924.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 259aa MW: 29308.6 Da PI: 8.6281

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004924.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.1	9.6e-29	114	168	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ W+++LHe F+ a++qLGGs+ AtPk+i+e+mkv+gLt+++vkSHLQkYRl Aco004924.1 114 KTRRSWSKDLHELFLVALKQLGGSQTATPKRIREVMKVNGLTNDEVKSHLQKYRL 168 689***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.43E-16	111	172	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.106	111	171	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-25	111	172	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-24	114	168	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-7	116	167	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MSSSMSAMSL EDGVMVKISI EPVFSKKSAA TGKSIESIEE VMKVVKWIAD VDSEIKKMMS 60 SEEKSHPLFK DVLAVDPNLK KEKEITMMPS DLSLSSSFHV ENSCSILRLQ QQRKTRRSWS 120 KDLHELFLVA LKQLGGSQTA TPKRIREVMK VNGLTNDEVK SHLQKYRLYS QKNAKASHIV 180 DRSLRLYGGV PREHYATWNH TASRSPESPL EFEKVDDELC FKEESADSGK DVRSQQALTF 240 PIFGYVYHLG IELYFLLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-13	114	167	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	114	167	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	114	167	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	114	167	1	54	Protein PHOSPHATE STARVATION RESPONSE 1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092051.1	1e-135	uncharacterized protein LOC109712719

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	7e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco004924.1