PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco004982.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 27376.6 Da PI: 7.9851

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004982.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.5e-17	78	130	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq Le+ F+++++++ + ++ LA+kl+L rqV vWFqNrRa+ Aco004982.1 78 RKKLRLTKEQSSLLEDSFREHSTLNPRLKQALARKLNLRPRQVEVWFQNRRAR 130 788899**********************************************8 PP
2	HD-ZIP_I/II	77.3	2.5e-25	78	150	1	74
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kk+rl+keq++lLE+sF+e+++L+p+ K++lar+L+l+prqv+vWFqnrRAR l ++ ++L+r++++lk Aco004982.1 78 RKKLRLTKEQSSLLEDSFREHSTLNPRLKQALARKLNLRPRQVEVWFQNRRARCC-ETLSTENRKLQRELQELK 150 69***************************************************84.456677777777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.516	74	134	IPR001356	Homeobox domain
SMART	SM00389	2.2E-12	76	138	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.85E-16	76	131	IPR009057	Homeodomain-like
CDD	cd00086	8.37E-15	78	131	No hit	No description
Pfam	PF00046	6.5E-15	78	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-16	83	131	IPR009057	Homeodomain-like
SMART	SM00340	2.0E-7	118	162	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MIMDTACEAN LVLGLSCAST VEFEPLPPNW SAAEPSLTLG LFESANPKTE TEARKPELGD 60 KESCRAISDE VEEEGIARKK LRLTKEQSSL LEDSFREHST LNPRLKQALA RKLNLRPRQV 120 EVWFQNRRAR CCETLSTENR KLQRELQELK SLKFMQPLYT ATALTVCPSC KRMITSTRLL 180 KSDCEGPLTH DVSLKPFLNG YSYARKDQLA RFEWCVYICS LLEVWNKTCY DMVRTTCVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020091584.1	1e-123	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	4e-45	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A199VPM2	1e-119	A0A199VPM2_ANACO; Homeobox-leucine zipper protein HAT22
STRING	XP_008798887.1	1e-49	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-47	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Aco004982.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]