PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005061.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LSD

Protein Properties

Length: 136aa MW: 14425.6 Da PI: 8.8211

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005061.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	48.1	1.9e-15	8	32	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+t+ Aco005061.1 8 CGGCRTLLMYNRGATSVRCSCCNTI 32 ***********************97 PP
2	zf-LSD1	41.3	2.5e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Crt+L YP+GA+sV+Ca+C+ V Aco005061.1 46 CAQCRTTLLYPYGASSVKCAICHYV 70 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.8E-17	5	35	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.2E-14	8	32	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.4E-12	43	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-12	46	70	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MDTAQLICGG CRTLLMYNRG ATSVRCSCCN TINLVRSANG VAQVNCAQCR TTLLYPYGAS 60 SVKCAICHYV TNIGMNNMRP PIPTAHRPNE APYTPPSTSS PTTQTQTVVV ENPMSVDERG 120 KLVSNVVVGV TTGKK*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092182.1	2e-93	protein LOL2
Swissprot	Q2QMB3	1e-59	LOL2_ORYSJ; Protein LOL2
TrEMBL	A0A199W473	5e-92	A0A199W473_ANACO; Protein LOL2
STRING	XP_008776040.1	7e-71	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-49	LSD family protein

Link Out ? help Back to Top
Phytozome	Aco005061.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]