PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005085.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 328aa    MW: 35523.9 Da    PI: 9.7432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005085.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +++++G g W+tI +          R+  ++k++w++
      Aco005085.1  5 KQKWTSEEEAALKAGIAKHGAGKWRTILKDPEfssilCLRSNVDLKDKWRN 55
                     79***********************************66***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.367161IPR017930Myb domain
SuperFamilySSF466897.25E-15262IPR009057Homeodomain-like
SMARTSM007177.0E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-13456IPR009057Homeodomain-like
PfamPF002497.9E-8556IPR001005SANT/Myb domain
CDDcd116608.20E-20657No hitNo description
SuperFamilySSF467851.14E-6118157IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005260.0062119179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-6120157IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGI AKHGAGKWRT ILKDPEFSSI LCLRSNVDLK DKWRNMNVTA  60
NGFGSREKGR IALKKSRHLY KHDDNPMALS TVLADGDEEI VDAKPLAMSS GPLSSASPKR  120
SVSRLDNLIF EAITTLKEPT GSNKTAIAAY IEVKRKYRIA PSSSFQEGKA SKVLLLEGLQ  180
REPSRPEKHD IKPFTKSQID AELARMKSMT AQEAAAAAAR AVAEAEAIMA DAEEAAREAE  240
AAEADAEAAK AFAEAAMLTL KNRNAADLIA WRDLIRSPSV TYCFIRKKSS SLMAIIGMYS  300
AKVKLSLIAL QLSSSVVIHA VCCVYTL*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6609778e-87KM660977.1 Ananas bracteatus clone 40609 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092922.10.0single myb histone 5 isoform X2
SwissprotC0HIA35e-79SMH6_MAIZE; Single myb histone 6
STRINGXP_008794468.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-69telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]