PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005182.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 336aa    MW: 37106.8 Da    PI: 5.4829
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005182.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17263297135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Aco005182.1 263 CTHCLSHKTPQWRAGPLGPKTLCNACGVRFKSGRL 297
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.002257293IPR000679Zinc finger, GATA-type
SMARTSM004015.2E-15257311IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-13261295IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.51E-14261321No hitNo description
CDDcd002022.81E-12262309No hitNo description
PfamPF003202.4E-15263297IPR000679Zinc finger, GATA-type
PROSITE patternPS003440263288IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEMKGERNAP LSGEAPARSP PESESPAPSP ASSVLGDFMP GPTVETGEDV SLEWLSIYVE  60
QCLSSSTTFS NPHSLTTPPS STTNNNNNNI KNNNNNNNIK NNNNNKNNKN PNSQTPQFCQ  120
ETPQLPQNPI PVPAKSRTKR RRITTTPRSL LGPLGEARYE YDYDYDYDYG PLLLAPPDPP  180
LLHQTQWLAD SELLSFPKTN PLKEEDRSGS ESKNPTPKGA EGDDDDDDDN EEEKKGKEEE  240
EEEGGQQQLG GQGQGQGQQL RRCTHCLSHK TPQWRAGPLG PKTLCNACGV RFKSGRLLPE  300
YRPAKSPTFV SYKHSNSHKK VMEMRMMAIL SSQSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093060.10.0GATA transcription factor 12-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59623656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.14e-35GATA transcription factor 2