PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005184.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 113aa    MW: 12702.9 Da    PI: 9.1295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005184.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.7e-222481258
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSST.TEEEEEEES--SS CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedp.kvveitYegeHnh 58
                 +Dgy+W+KYGqK +++ ++ rsY++C  ++C++kk+ve   ++p + + i+Y g+H h
  Aco005184.1 24 EDGYEWKKYGQKFIRNIQMIRSYFKCRNNRCNAKKRVEWIPSNPtNNIRIVYDGQHSH 81
                 7*************************************99888626799********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.8781884IPR003657WRKY domain
SuperFamilySSF1182901.07E-202184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-222184IPR003657WRKY domain
SMARTSM007745.4E-222383IPR003657WRKY domain
PfamPF031063.3E-202481IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
DQGAEGRREE QPPEVGGGRL VMPEDGYEWK KYGQKFIRNI QMIRSYFKCR NNRCNAKKRV  60
EWIPSNPTNN IRIVYDGQHS HGAPSGSDQA SSSANQYDLG NQVFGRSNNE PS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092813.11e-79WRKY transcription factor 44-like
TrEMBLQ7Y0A81e-37Q7Y0A8_ORYSJ; DNA-binding protein, putative, expressed
STRINGOS03T0657400-003e-38(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-16WRKY DNA-binding protein 23