PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005240.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 347aa MW: 38557.8 Da PI: 10.4287

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005240.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.5	9.8e-32	277	334	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ Aco005240.1 277 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDPSMLIVTYEGEHNHT 334 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	6.2E-19	228	273	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.6E-34	263	334	IPR003657	WRKY domain
PROSITE profile	PS50811	30.228	270	336	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-27	273	334	IPR003657	WRKY domain
SMART	SM00774	4.7E-39	275	335	IPR003657	WRKY domain
Pfam	PF03106	1.2E-27	277	333	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MEEVEEANRE AIESCYKVLS LISQSQDQQH LQRNILAETG EAVSKFKKVV SILSSSVGHA 60 RVRIVKKSTT PLNQKILLQD PLISNPNPFN LLQRSALHKQ QFRPKIYLEN PIVELKPASS 120 RSTLQLPPQA APPAHFGFLQ QQQQLLQQQQ QQQQQNSQRY QFQAEIFRRS NSGINLKFDS 180 SSGVQTISSA RSFLSSLSMD GSVDGKAFHL IGGGAAASDP AHSFPPPKRR CTGKGEDGSG 240 KCAATGRCHC SKRRKLRVKR SIKVPAISNK LADIPPDEYS WRKYGQKPIK GSPHPRGYYK 300 CSSMRGCPAR KHVERCLDDP SMLIVTYEGE HNHTRAVTHS THSAQT*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MEEVEEANRE AIESCYKVLS LISQSQDQQH LQRNILAETG EAVSKFKKVV SILSSSVGHA  60
RVRIVKKSTT PLNQKILLQD PLISNPNPFN LLQRSALHKQ QFRPKIYLEN PIVELKPASS  120
RSTLQLPPQA APPAHFGFLQ QQQQLLQQQQ QQQQQNSQRY QFQAEIFRRS NSGINLKFDS  180
SSGVQTISSA RSFLSSLSMD GSVDGKAFHL IGGGAAASDP AHSFPPPKRR CTGKGEDGSG  240
KCAATGRCHC SKRRKLRVKR SIKVPAISNK LADIPPDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSMRGCPAR KHVERCLDDP SMLIVTYEGE HNHTRAVTHS THSAQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-20	271	333	10	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092749.1	0.0	probable WRKY transcription factor 21 isoform X1
Refseq	XP_020092750.1	0.0	probable WRKY transcription factor 21 isoform X1
Swissprot	Q9SR07	2e-99	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A199W6R0	0.0	A0A199W6R0_ANACO; Putative WRKY transcription factor 74
STRING	XP_008805954.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	2e-82	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	Aco005240.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]