PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005263.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

SRS

Protein Properties

Length: 361aa MW: 40249.6 Da PI: 7.1836

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005263.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	22.8	2.6e-07	46	80	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C CGn a+ C ++ C+ CC C+ hv Aco005263.1 46 KPKCIKCGNVARSRCPFQSCKSCCFKAQNPCHIHV 80 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.0E-4	48	81	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MATSSPVSSS KGGDSIGSTA AINGNTTPQR TTVIDTPRPN LRGLNKPKCI KCGNVARSRC 60 PFQSCKSCCF KAQNPCHIHV LKQSSILPDK PPPSRSPSIE QPSIDIPSTG SAWRLNALKQ 120 LPHNFLNALR AKKPLNKKDV ANINKWKFAK LREYIEGNIE AENEAFERYL QNVALLEEIF 180 VIPDELKEEN RAAAESTSED KMQRLVSEIK IKLKSNSDKE ESFRERIRNI LDQKLEKLRE 240 KERSNEEGAL SDDLASIKKR GERTAALNDL IDKMNRARGE EDLISCLEMR SQLFRDSASN 300 ATEKCEELNV GDSSACKEEA ETTNSFSYSL PFVCIAVDVD QRMLSDIDAE FASLSRIVEL 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MATSSPVSSS KGGDSIGSTA AINGNTTPQR TTVIDTPRPN LRGLNKPKCI KCGNVARSRC  60
PFQSCKSCCF KAQNPCHIHV LKQSSILPDK PPPSRSPSIE QPSIDIPSTG SAWRLNALKQ  120
LPHNFLNALR AKKPLNKKDV ANINKWKFAK LREYIEGNIE AENEAFERYL QNVALLEEIF  180
VIPDELKEEN RAAAESTSED KMQRLVSEIK IKLKSNSDKE ESFRERIRNI LDQKLEKLRE  240
KERSNEEGAL SDDLASIKKR GERTAALNDL IDKMNRARGE EDLISCLEMR SQLFRDSASN  300
ATEKCEELNV GDSSACKEEA ETTNSFSYSL PFVCIAVDVD QRMLSDIDAE FASLSRIVEL  360
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	237	242	LREKER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093227.1	0.0	uncharacterized protein LOC109713514
Refseq	XP_020093228.1	0.0	uncharacterized protein LOC109713514
TrEMBL	A0A199UN97	0.0	A0A199UN97_ANACO; Uncharacterized protein
STRING	XP_008778080.1	1e-133	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7375	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-76

Link Out ? help Back to Top
Phytozome	Aco005263.1