PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005280.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 299aa    MW: 32396.3 Da    PI: 5.1275
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.3e-15190226135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  Aco005280.1 190 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANKGT 226
                  **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.45085IPR010399Tify domain
SMARTSM009792.7E-105085IPR010399Tify domain
PfamPF062001.9E-135284IPR010399Tify domain
PfamPF062033.3E-14119160IPR010402CCT domain
PROSITE profilePS5101713.126119161IPR010402CCT domain
SMARTSM004012.9E-10184238IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-11187239No hitNo description
CDDcd002022.03E-15189243No hitNo description
Gene3DG3DSA:3.30.50.102.3E-14189229IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440190217IPR000679Zinc finger, GATA-type
PfamPF003202.0E-13190226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSEADPQERN VYGHDAVAGA EDLDGAISVP AAAPEQEHFA DAADSAMPLM SAGSNQLTLL  60
FQGEVYVFDS VTPEKVQAVL LLLGGCEVPT GIASMALPAQ QDERVYDDIL RRTDIPAKRI  120
ASLIRFREKR KERNFDKKIR YTVRKEVALR MQRRRGQFAG KANAEGISAS PSCDPPQGSS  180
QDEPPRESRC QNCGISEKMT PAMRRGPAGP RSLCNACGLM WANKGTLRSF SKAKIDTQNS  240
ANPSEEGDTI HSVMGSDSKA IVHVSDNHNT IPTSAEIITE GVPADVRQET EEDLKTEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6611451e-145KM661145.1 Ananas bracteatus clone 42173 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092319.10.0GATA transcription factor 18-like isoform X1
SwissprotA2XKR71e-108GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A199UNT70.0A0A199UNT7_ANACO; GATA transcription factor 28
STRINGXP_008794051.11e-150(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-67ZIM-like 1