PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005372.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 102aa    MW: 11348.8 Da    PI: 9.4374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005372.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.3e-091561347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +l+ +a + + ++   +W+ +ar +g g++++++k ++ ++
      Aco005372.1 15 QWTPKQNKLFEQALAVYDKDtpdRWHNVARAVG-GKSAEEVKRYYEQL 61
                     6********************************.***********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.1731166IPR017884SANT domain
SMARTSM007176.8E-81264IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-61568IPR009057Homeodomain-like
SuperFamilySSF466891.64E-121569IPR009057Homeodomain-like
PfamPF002492.8E-71561IPR001005SANT/Myb domain
CDDcd001671.68E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASCSMSSSR GSVSQWTPKQ NKLFEQALAV YDKDTPDRWH NVARAVGGKS AEEVKRYYEQ  60
LVEDIERIES GRVPFPIYRS SGGKGGGAVA YEEQRLKHLK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-376101192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099017.12e-70protein RADIALIS-like 3
SwissprotQ1A1731e-37RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A199V7Z01e-64A0A199V7Z0_ANACO; Protein RADIALIS-like 6
STRINGSi023770m7e-47(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-39RAD-like 1