PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005381.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 256aa    MW: 27379.4 Da    PI: 8.8905
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005381.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.7e-20128162135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Aco005381.1 128 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 162
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-20122174IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.048122158IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.47E-14125163No hitNo description
Gene3DG3DSA:3.30.50.103.8E-17126162IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.74E-13127159No hitNo description
PROSITE patternPS003440128153IPR000679Zinc finger, GATA-type
PfamPF003205.9E-18128162IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLHHYPNHGC GGAAEHGCGG ATAASFSALF HVPRKLPAHE AYDAHHDAAV DCTLSLGTPA  60
TRRGGSPAPA PAPAPAPQPX RPRPRRRGAT RAPPRRRCEA AAVGFKESGA SAGASVNLGA  120
DPLVARRCAN CDTTSTPLWR NGPRGPKSLC NACGIRYKKE ERRAAATTSE AAEKANAYTQ  180
PRSQQQWGCY GSTVDKDPSF SIYGSDDTMM DDGDLPYLSW RLNITRCTVH RTWVTIFPSS  240
LDPELRSFCG YVAWV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098412.11e-116GATA transcription factor 19-like
TrEMBLA0A199W1L97e-95A0A199W1L9_ANACO; GATA transcription factor 18
STRINGXP_008800719.11e-47(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.14e-19GATA family protein