PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005425.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 201aa    MW: 22817 Da    PI: 8.5094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005425.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1856109356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ +++keq++ Lee F+ +++++ +++  LA kl+L  rqV vWFqNrRa+ k
  Aco005425.1  56 KKLRLSKEQTRLLEESFRHHHNLNPKQKGALAVKLKLRSRQVEVWFQNRRARTK 109
                  566899**********************************************98 PP
2HD-ZIP_I/II117.86.2e-3856143289
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  kk+rlskeq +lLEesF+++++L+p++K +la +L+l+ rqv+vWFqnrRARtk kq+E+++e+Lkr++ +l+een+rL++eve+Lr+
  Aco005425.1  56 KKLRLSKEQTRLLEESFRHHHNLNPKQKGALAVKLKLRSRQVEVWFQNRRARTKVKQTEMECEYLKRCFGSLTEENHRLQSEVEQLRA 143
                  9*************************************************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1729112IPR009057Homeodomain-like
PROSITE profilePS5007116.42251111IPR001356Homeobox domain
SMARTSM003896.4E-1453115IPR001356Homeobox domain
SuperFamilySSF466894.71E-1853120IPR009057Homeodomain-like
CDDcd000863.95E-1254112No hitNo description
PfamPF000461.7E-1556109IPR001356Homeobox domain
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
SMARTSM003401.5E-20111154IPR003106Leucine zipper, homeobox-associated
PfamPF021834.8E-10111144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVCVWGVEAG GGGGGESKMV MMRELDINMP ASREGEDEDG EEEEAKEEDG GARRVKKLRL  60
SKEQTRLLEE SFRHHHNLNP KQKGALAVKL KLRSRQVEVW FQNRRARTKV KQTEMECEYL  120
KRCFGSLTEE NHRLQSEVEQ LRALRVPPPV VLPPHTRLSL PTSSFTMCPH CEHISSATST  180
SHHTTWRLRY SQSIGFGIVP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111RRARTKVKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099272.11e-141homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX13e-73HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-73HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A199VMI81e-135A0A199VMI8_ANACO; Homeobox-leucine zipper protein HOX3 (Fragment)
STRINGOS01T0643600-001e-71(Oryza sativa)
STRINGSi002823m1e-71(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.17e-43homeobox-leucine zipper protein 17