PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005453.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 179aa    MW: 19336.2 Da    PI: 10.4267
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005453.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.94e-21263313374
         GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++Wr+rl++aG+ pv+l+++a kqa++ll  ++++gy v+e +g+l+lgW++rpL+s+SaWr
  Aco005453.1   2 GRWRARLTRAGLCPVHLGSNAFKQASMLLTLFSGEGYCVDEVDGCLTLGWHNRPLISASAWR 63 
                  68***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.457143IPR005202Transcription factor GRAS
PfamPF035141.4E-18263IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
LGRWRARLTR AGLCPVHLGS NAFKQASMLL TLFSGEGYCV DEVDGCLTLG WHNRPLISAS  60
AWRADSDDVA SDDTTTLVIT WAVRGLGHEI RGHAGVICHV SGRGYSCACV MRSGLRVFSA  120
VRWCSGGGSP RRRNCVRRRR GCEERGRGPS VKRGPFDGGC SGKIVPLLSR ATVYHPRP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.18e-21GRAS family protein