PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005454.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 396aa    MW: 42684.1 Da    PI: 6.3231
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005454.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.29e-74186392100297
         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  +aIlea++g++rvH++Df+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ ++el+e+g rLa++A++++v+f f+ ++a rl+d+++++L+v 
  Aco005454.1 186 KAILEAFDGHDRVHVVDFSLMQGLQWPALIQALALRPGGPPILRVTGIGPPSTNGRDELREVGLRLAELARSVHVRFAFRGVAAARLDDVRPWMLQVA 283
                  8********************************************************************************9999************* PP

         GRAS 198 pgEalaVnlvlqlhrllde.svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak........lpreseerikvE 286
                  +gEa+aVn+vlqlhrll+  +++ + ++d+vL+ v +l+Pk+v+vveqeadhns+ Fl+rf+eal yys++fdslea+         +++++   ++ 
  Aco005454.1 284 RGEAVAVNCVLQLHRLLAAaPAPAPAPIDSVLRWVVGLRPKIVTVVEQEADHNSPAFLDRFTEALFYYSTVFDSLEAGstaphhhhHHHHHQSSLMMA 381
                  ***************997614556669************************************************87766665554444449999*** PP

         GRAS 287 rellgreivnv 297
                  +++l+rei+n+
  Aco005454.1 382 EMYLQREICNI 392
                  **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.8E-143399No hitNo description
PfamPF120414.9E-233392IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098534.092182395IPR005202Transcription factor GRAS
PfamPF035143.1E-71186392IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGSRPYGFGS AGAGDGWGAH DPASLQSSGP EIDGLLAGAG YRVRSSDLRH VARSLERLDA  60
AAAAAAAPEA VHYNPSDLTA WVDSMLSELN PDAAAAAGPE SAFPQPQRDA WTAQMLQQQQ  120
QIQMAAAAAR RRREEEEEDS GIRLVHLLMS CADAVQRGDA PLAGSLVDEM RLLLAGRVNT  180
AFGIGKAILE AFDGHDRVHV VDFSLMQGLQ WPALIQALAL RPGGPPILRV TGIGPPSTNG  240
RDELREVGLR LAELARSVHV RFAFRGVAAA RLDDVRPWML QVARGEAVAV NCVLQLHRLL  300
AAAPAPAPAP IDSVLRWVVG LRPKIVTVVE QEADHNSPAF LDRFTEALFY YSTVFDSLEA  360
GSTAPHHHHH HHHHQSSLMM AEMYLQREIC NIXNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-29182395114306Protein SCARECROW
5b3h_A7e-29182395113305Protein SCARECROW
5b3h_D7e-29182395113305Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916867.11e-150DELLA protein GAI
TrEMBLA0A2H3X2I31e-148A0A2H3X2I3_PHODC; DELLA protein GAI-like
STRINGXP_008777332.11e-149(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.16e-74GRAS family protein