PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005495.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

NF-YB

Protein Properties

Length: 169aa MW: 18328.6 Da PI: 5.0433

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005495.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	129.9	8.6e-41	1	84	17	94
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtse......asdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 m+k++P+n+kiskdake++qecvsefisfvtse asdkcqrekrktingddllwa++tlGfedyveplk+yl+ yre + Aco005495.1 1 MRKAIPENGKISKDAKESIQECVSEFISFVTSEfgfwsrASDKCQREKRKTINGDDLLWAMGTLGFEDYVEPLKLYLQLYREGD 84 89***************************987777779***************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	9.04E-27	1	96	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.8E-37	1	96	IPR009072	Histone-fold
Pfam	PF00808	2.7E-17	1	61	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.2E-16	19	37	No hit	No description
PRINTS	PR00615	3.2E-16	44	62	No hit	No description
PRINTS	PR00615	3.2E-16	63	81	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MRKAIPENGK ISKDAKESIQ ECVSEFISFV TSEFGFWSRA SDKCQREKRK TINGDDLLWA 60 MGTLGFEDYV EPLKLYLQLY REGDSKGSRP ADQSGKKEGV INGDPGASYI NVIHVDGELE 120 SASSGLSLKG NWSLEGLVFD TNQLGRMPAS SVGIPQCSVW GLGKASSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-35	1	82	18	93	NF-YB
4awl_B	1e-35	1	82	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-35	1	82	19	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269\|PubMed:14617083}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662512	4e-50	KM662512.1 Ananas bracteatus clone 46299b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098726.1	8e-64	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit B-4-like
Swissprot	Q65XK1	6e-52	NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A199VJB1	6e-65	A0A199VJB1_ANACO; Nuclear transcription factor Y subunit B-4 (Fragment)
STRING	XP_008791402.1	2e-57	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	7e-45	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	Aco005495.1

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]