PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005509.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 253aa    MW: 26786.8 Da    PI: 9.5748
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005509.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.8e-10116146236
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                   y+GVr++  +g+WvAeIr p +   r r++lg++
  Aco005509.1 116 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTY 146
                  59****999.**********954...5*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.74E-13115146No hitNo description
Gene3DG3DSA:3.30.730.102.1E-15116149IPR001471AP2/ERF domain
PROSITE profilePS5103213.656116146IPR001471AP2/ERF domain
SMARTSM003801.9E-7116160IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-9116149IPR016177DNA-binding domain
PRINTSPR003677.9E-6117128IPR001471AP2/ERF domain
PfamPF008474.6E-5117146IPR001471AP2/ERF domain
PRINTSPR003677.9E-6139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MERAKRESLA EIASFPSDIG SASSAVSSVL LSGTNALDSI FSHLPPPLPP PPLRPFLPPL  60
SAAAAPEQLG SGVYLRQTEL LRRLGVALAR AHPCYAHRGG FGGAAAAAAS ARGTKLYRGV  120
RQRQWGKWVA EIRLPQNRVR VWLGTYRPAK PNPKPNTNPN PSKKDPPAND DSNNNNSNHN  180
NNQSINNSHA VVAPSPSQEC PANTSSWSSS SSSSSTSSES AATVGFAEMD GECSLARMPS  240
FDPELIWEVL AN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1042843e-36AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence.
GenBankAP0149613e-36AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-36CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8376113e-36CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence.
GenBankCT8416873e-36CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098196.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-20ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A199W8E82e-54A0A199W8E8_ANACO; Ethylene-responsive transcription factor ERF061
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-15ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]