PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005587.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 289aa MW: 30818.3 Da PI: 5.7672

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005587.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	84	142	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++++tY+ eHnh+ Aco005587.1 84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVVTYSFEHNHP 142 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.627	78	144	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.2E-31	80	144	IPR003657	WRKY domain
SuperFamily	SSF118290	9.94E-27	81	144	IPR003657	WRKY domain
SMART	SM00774	4.8E-37	83	143	IPR003657	WRKY domain
Pfam	PF03106	5.9E-27	85	142	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDGYCSSNSP TFEPEEVGIV PGHESIPSPP GEHNKLAHPL ASAQSTSSPA KRSRRSVQKR 60 VVTVPIAGTD GPRPKGVGEG APPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ 120 VERSRTDPNM LVVTYSFEHN HPWPMPKSHH HHKAQAQTRP VEEAEPPPAR PEPDEKFAGL 180 VGDEPALMVH DDFHWFSDVA SSPASTSPPA AADDAFLYAP IFGAAEIDAA MLLPEERGEE 240 LGGGGRGAGE EEEEDALFAG LGELPECAVV LRRGAFGLAV APWCGSTG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-22	59	144	6	79	Disease resistance protein RRS1
5w3x_D	8e-22	59	144	6	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098317.1	0.0	probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-57	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A199VNI3	0.0	A0A199VNI3_ANACO; Putative WRKY transcription factor 65
STRING	XP_008792327.1	2e-95	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10947	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-40	WRKY DNA-binding protein 65

Link Out ? help Back to Top
Phytozome	Aco005587.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]