PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005629.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 342aa    MW: 39189.9 Da    PI: 8.7018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005629.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.7e-1912981799
                 E--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 17 vlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +p +f++++        +++ke skt +le +sg +W v+l   k+ ++++lt+GW +Fvk++ +ke +f+vF++dg++ f  +v vf+k
  Aco005629.1 12 KIPPNFLKHIsteasrttNNSKEASKTAILEGPSGSKWHVEL--GKTAKGTFLTNGWPKFVKDHSMKEYEFLVFRYDGSMHF--TVIVFDK 98
                 5899999777999999998888999*****************..*********************************99999..8888887 PP
2B350.34.3e-16233321398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    + p +v  s +l++p +f +eh   +++ ++++l+d+sg  W+v +    + +   l++GW  F++ n L+egD + F+l++    e++v+vfr
  Aco005629.1 233 IRMCPMHVYWSYMLRFPVRFSREHL--PRNRVDMVLRDPSGAAWKVVY--IPSTRD-RLSGGWGAFARGNCLEEGDYCAFELIE--PLEFRVHVFR 321
                  5667778888889***********5..346789***************..444433.49**********************997..5555999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.971199IPR003340B3 DNA binding domain
SMARTSM010191.4E-10399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-1912101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-2012103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-161398IPR003340B3 DNA binding domain
CDDcd100176.31E-151397No hitNo description
Gene3DG3DSA:2.40.330.101.7E-22223321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-25224321IPR015300DNA-binding pseudobarrel domain
CDDcd100178.12E-23229321No hitNo description
PROSITE profilePS5086313.338231323IPR003340B3 DNA binding domain
PfamPF023622.1E-14231321IPR003340B3 DNA binding domain
SMARTSM010195.5E-12231323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MIFITIFLRV QKIPPNFLKH ISTEASRTTN NSKEASKTAI LEGPSGSKWH VELGKTAKGT  60
FLTNGWPKFV KDHSMKEYEF LVFRYDGSMH FTVIVFDKTA CEREDLFSVR AGRPQKLSSD  120
IHYSVVKNEA SESELTELPS SENRTLNRLQ VVCSDSVQTK ARASNCYPLK ILWSHYLDFN  180
VETEGDELPI CAIPTPPKRC QYMSRRRPVA DEERLKAQEA AASFKSTFPY FIIRMCPMHV  240
YWSYMLRFPV RFSREHLPRN RVDMVLRDPS GAAWKVVYIP STRDRLSGGW GAFARGNCLE  300
EGDYCAFELI EPLEFRVHVF RVVEETQPPL RLSKNLGGLD V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098318.10.0B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E61e-102Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A199VNG50.0A0A199VNG5_ANACO; B3 domain-containing protein (Fragment)
STRINGXP_008810645.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.16e-14B3 family protein