PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005652.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 260aa    MW: 28013.4 Da    PI: 8.9045
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005652.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14106150347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
      Aco005652.1 106 PWSEEEHRLFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKF 150
                      7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.73198155IPR017930Myb domain
SuperFamilySSF466896.58E-17101156IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-17103154IPR006447Myb domain, plants
SMARTSM007172.9E-10103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-11104146IPR009057Homeodomain-like
CDDcd001675.41E-10106151No hitNo description
PfamPF002497.2E-11106149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRKCSHCGN YGHNLRTCSS HRSAFGGGGG GGLKLFGVQV YAASALKKSF STECLNSCYL  60
ASSSASPSSS SSSSLVSTEG ATEKISYGYL SDGLLGRAQD RRKGIPWSEE EHRLFLAGLE  120
KLGKGDWRGI SRNFVTTRTP TQVASHAQKF FLRQNSLNNK KRRSSLFDMV SSCEVAAHPY  180
EFPSLKDLSL SNELHAPTLS LKTVDTEASA NIGIDLNSAC HSQFTKPFLS EEKSCIDLEL  240
SISSSRPSNS KYLATDFAL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6609080.0KM660908.1 Ananas bracteatus clone 39422 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098178.10.0transcription factor MYB1R1-like
SwissprotQ7XC576e-49MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A199VEK60.0A0A199VEK6_ANACO; Transcription factor MYB1R1
STRINGXP_008799749.12e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-57MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]