PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005719.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 203aa MW: 21780 Da PI: 7.4284

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005719.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.2	2.6e-31	115	173	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh Aco005719.1 115 VDDGFRWRKYGKKSVKNSPNPRNYYRCSTEGCSVKKRVERDKDDPSYVITTYEGVHNHM 173 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-33	101	175	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-28	108	174	IPR003657	WRKY domain
PROSITE profile	PS50811	31.1	110	175	IPR003657	WRKY domain
SMART	SM00774	1.3E-35	115	174	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	116	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MAALHAAASY MAYFPPQGQG STSSDDPPAA NPTSGFDLSD FIFFDEGSTP PTSFAQLGTG 60 AITPQPATES AYAGQSSGRS VPASGSSTTS GIRAEVERPR TERIAFRMKS EVEIVDDGFR 120 WRKYGKKSVK NSPNPRNYYR CSTEGCSVKK RVERDKDDPS YVITTYEGVH NHMSPGVVYY 180 TTQDAASGRY FVAGCQIPPG SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	110	175	12	77	Probable WRKY transcription factor 4
2lex_A	2e-25	110	175	12	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020098275.1	1e-148	probable WRKY transcription factor 50
Swissprot	Q93WU9	5e-42	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A199VKQ2	1e-116	A0A199VKQ2_ANACO; Putative WRKY transcription factor 51
STRING	XP_008810071.1	5e-77	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-42	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	Aco005719.1

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]