PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005757.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 654aa    MW: 72295.4 Da    PI: 6.7751
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005757.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06362385326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +lC  f  +G C++Gd+C+F+H+
  Aco005757.1 362 KRLCFSFTSSGNCSRGDKCNFSHD 385
                  6888899999*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073804.79E-4048270No hitNo description
PROSITE profilePS5010314.831359387IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4359386IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5361385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6363386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5363387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6391420IPR000571Zinc finger, CCCH-type
SMARTSM003560.034391418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77391419IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5392420IPR000571Zinc finger, CCCH-type
PfamPF046773.9E-34433546IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.64E-7437533IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.102.3E-4438505IPR011146HIT-like domain
PfamPF046761.6E-16570650IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
RDDDFIFATE SEKTASLDKN LVSIARYSRD EAPPPTTMAS SSSSPRILLC GDVFGRLHHL  60
FKRVHSVNQS TGPFDALLCV GQFFADSPDR PDELSDYVDG RAAVPIPTYF TGDYGVGAAR  120
VLSAAAKRFP DRGFATDGVE LCPNLYWLKG SGRFSLQGLS VVYLSGKRPG EGDASGGYSE  180
DDVDALRALA EQPGIVDLFW PSGVANGADT SEAPAGVMDP SGCDPVIAEL AAEIKPRYHI  240
AGTKGVFYGR EPYSNSEAAH VTRFIGLATV GNKDKQCYVS ILITYMPSQR FIHAISPTPA  300
SSMSNAEIRA RPPNTTESPY QDSAKVTHAG EAKKRTVDIV DTQYWRYDVS QKRQRQGGAD  360
GKRLCFSFTS SGNCSRGDKC NFSHDSDARV QYQRNVCFDF LNKGKCERGS DCKFGHSISE  420
DGASFSRETR PPRRSEKTCW FCLSCPNVEL HLVLSIGESY YCALAKGPLV ENHVLLVPIE  480
HCPNTLMMSS EAEAELGRYK SALNLYFKNQ EKSVVYFEWV FQHSPHANLQ AIPIPLSKAS  540
SVEKIFSLAA KRTGFEFVVL NPDNDSTDGR KLLRSQFDGK SSLFYVELPE GKILLHRVDD  600
NEKFPVQFGR EVLAGLLRMP DRADWRNCKV TKEDEMMMVD GFKEGFRKFD PAR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6669121e-174KM666912.1 Ananas bracteatus clone 52325 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099014.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A199VPQ40.0A0A199VPQ4_ANACO; Zinc finger CCCH domain-containing protein 59
STRINGXP_008795433.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-06C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]