PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005759.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 481aa    MW: 52357.3 Da    PI: 8.33
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005759.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-057799123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aco005759.1 77 FVCEICSKGFQRDQNLQLHRRGH 99
                 89*******************88 PP
2zf-C2H211.30.0011154176123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Aco005759.1 154 WKCDKCSKKYAVQSDWKAHSKIC 176
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-77699No hitNo description
Gene3DG3DSA:3.30.160.605.7E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0367799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8877799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355140119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-7149174No hitNo description
SMARTSM00355150154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MKELEIQHQQ AVDESMSNLS TSASAASPLS SNHQSSLASP NPNPNPAKKK RSLPGNPDPD  60
AEVIALSPKT LMATNRFVCE ICSKGFQRDQ NLQLHRRGHN LPWRLKQKAS NKEVRKKVYI  120
CPEVSCVHHD PSRALGDLTG IKKHFFRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE  180
YKCDCGTLFS RRDSFITHRA FCDALAEETA KSITANTVTD HHPLPPPPPP PPPLLFSHQP  240
TLSHDFSTLQ DHTTNSNHGD LDLHHQDQLS NIEEKHHDQQ QQQQQYLTMA KAHYKEIIPS  300
WASLNHSEKP FSLYPNENQH QQSLSTAASP HLSATALLQK AAQMGVTMSR APQNGHTSTT  360
HYTSSTSTSA NYGGFGLGLS SSHEVGGSGP VFHDMMVSSL SSGSCLDGSL PQGAINGVGS  420
LRSSHGSRNE EGGGVGGGGG GGVGDGLTRD FLGLRAFSPR EIFNMAGFDP CMNPSSYHQP  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34150211364Zinc finger protein JACKDAW
5b3h_F2e-34150211364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116RLKQKASNKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098548.10.0protein indeterminate-domain 2-like
TrEMBLA0A199VQ450.0A0A199VQ45_ANACO; Protein indeterminate-domain 2
STRINGXP_008793218.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2