PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005768.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 148aa    MW: 15965.9 Da    PI: 9.2657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005768.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.6e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v ++G g W+tI +         +R+  ++k++w++
      Aco005768.1  5 KQKWTSEEEEALRAGVDKHGAGKWRTIQKDPEfshclATRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.528161IPR017930Myb domain
SuperFamilySSF466893.59E-16258IPR009057Homeodomain-like
SMARTSM007179.9E-8459IPR001005SANT/Myb domain
PfamPF002494.6E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-15556IPR009057Homeodomain-like
CDDcd116601.48E-21656No hitNo description
Gene3DG3DSA:1.10.10.103.8E-5112145IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-5113145IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRAGV DKHGAGKWRT IQKDPEFSHC LATRSNIDLK DKWRNMSISA  60
NGQGTREKVR TPKVKSLQAT PSSSSQGVAV SVQRKDEATT AAVDRANSSQ DAKNPPRYNA  120
MIIEALAALQ EPNGSEIGAI CSFIEVV*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0945246e-52FP094524.1 Phyllostachys edulis cDNA clone: bphylf024j07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099057.11e-104single myb histone 4
SwissprotQ8W1193e-51SMH4_MAIZE; Single myb histone 4
TrEMBLA0A2H3YFB23e-83A0A2H3YFB2_PHODC; single myb histone 4-like
STRINGXP_008797902.15e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-42MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]