PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco005835.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 241aa MW: 27467.1 Da PI: 5.7273

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco005835.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	2.8e-28	120	169	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +e+l++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl Aco005835.1 120 SNIGFEELRNYFYMPITKAAKEMNVGLTVLKKRCRELGIPRWPHRKMKSL 169 699*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.769	104	189	IPR003035	RWP-RK domain
Pfam	PF02042	9.2E-23	121	169	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSTDVFDHAE DNEFVEADAL ALPKIIDQFD DELSQLCSSG IFSYQWYPSQ TIDDVTIDDI 60 DLDSFSWNNQ SLPSNSDGDD PNKEVAVCKV IVPSSSGGAS ISMREERVVR RRATGRSRLS 120 NIGFEELRNY FYMPITKAAK EMNVGLTVLK KRCRELGIPR WPHRKMKSLS SLIHNVQELG 180 KGSPDSEESI QKELEMLELH RQLMEENPDV QLTERTKKLR QACFKANYKK RRALQHPCIL 240 *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105610.1	1e-158	protein RKD3
Swissprot	Q9FGD1	1e-41	RKD3_ARATH; Protein RKD3
TrEMBL	A0A199VEV5	1e-152	A0A199VEV5_ANACO; Protein RKD3
STRING	GSMUA_Achr4P08610_001	6e-69	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-43	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco005835.1

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]