PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005885.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 252aa    MW: 27768.3 Da    PI: 9.1368
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005885.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86e-1677168290
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +k+l +sdv+ +gr+vlpkk ae+h   +k + ++ + ++d++  + W++k++y  +++s++y+l+ +  e+vk++gL+ gD ++ + d++ + 
  Aco005885.1  77 QKELRNSDVGPLGRIVLPKKEAEAHlpTLKARDGISINMYDLETfQLWTFKYRYwpNNRSRMYILE-NAGEYVKSHGLQLGDYIMMYKDDT-KD 168
                  7999***********************8889999*******5555*********766677777777.****************99995443.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2372181IPR015300DNA-binding pseudobarrel domain
CDDcd100176.73E-2374176No hitNo description
SuperFamilySSF1019362.55E-1875172IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-1176176IPR003340B3 DNA binding domain
PROSITE profilePS508639.03776178IPR003340B3 DNA binding domain
PfamPF023623.8E-1277171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAGPTKNGAS SSAAAAGSDD LRTAAAAVGG FRAGRKRRSS GRQRRRKPPH ARETALDLNV  60
PALDPDQAVD GLRFILQKEL RNSDVGPLGR IVLPKKEAEA HLPTLKARDG ISINMYDLET  120
FQLWTFKYRY WPNNRSRMYI LENAGEYVKS HGLQLGDYIM MYKDDTKDKF IIRAKKTANK  180
EEAVDSTDDG IFDSIVPDIV VASARYSDLF LPLGDGMSMA YNLSFAFAAD FSMSFPDERA  240
MGNDSINKSD G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-48721881116B3 domain-containing transcription factor FUS3
6j9b_D3e-48721881116B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105605.11e-156B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-54LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLM0SJQ84e-97M0SJQ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P32440_0017e-98(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.17e-49B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]