PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005897.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 185aa    MW: 20803.8 Da    PI: 6.8742
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005897.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30100158159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYG+K+vk+s++pr+YYrC+s gC+vkk+v+r++ed ++v++tYeg Hnh+
  Aco005897.1 100 LDDGYKWRKYGKKMVKNSPNPRNYYRCSSDGCNVKKRVQREKEDSRYVITTYEGVHNHH 158
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-3288158IPR003657WRKY domain
SuperFamilySSF1182901.57E-2793158IPR003657WRKY domain
PROSITE profilePS5081130.46995160IPR003657WRKY domain
SMARTSM007741.9E-35100159IPR003657WRKY domain
PfamPF031064.7E-24101158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSSYSLLSSN SSENDHPDDM SFEIMDFLTF GEHPREETSA RDQPPFWEQS HVVLQENSSE  60
ASRTSGGDCS KQVSQSARAS SSKGGRMKVA FKTKSELEVL DDGYKWRKYG KKMVKNSPNP  120
RNYYRCSSDG CNVKKRVQRE KEDSRYVITT YEGVHNHHAL LPASADYEAS GKDTLANCFQ  180
ESHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-2590163778Probable WRKY transcription factor 4
2lex_A1e-2590163778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105443.11e-137probable WRKY transcription factor 75 isoform X1
TrEMBLA0A199V3921e-114A0A199V392_ANACO; Putative WRKY transcription factor 50
STRINGGSMUA_Achr8P26240_0011e-52(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-39WRKY DNA-binding protein 50