PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005906.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 1009aa    MW: 108568 Da    PI: 6.0912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005906.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.2e-30236295159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ kg+++pr+YYrCt +  Cpv+k+v+r+aed +++++tYeg+Hnh+
  Aco005906.1 236 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVSpACPVRKQVQRCAEDMSILVTTYEGTHNHP 295
                  58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-31222297IPR003657WRKY domain
SuperFamilySSF1182909.94E-27229297IPR003657WRKY domain
PROSITE profilePS5081128.552231297IPR003657WRKY domain
SMARTSM007742.6E-36236296IPR003657WRKY domain
PfamPF031061.9E-26237295IPR003657WRKY domain
SuperFamilySSF546311.65E-17592676No hitNo description
PROSITE profilePS513719.147604670IPR000644CBS domain
Gene3DG3DSA:3.10.580.104.0E-9609669No hitNo description
SMARTSM001161.7609665IPR000644CBS domain
CDDcd022053.06E-4609676No hitNo description
SuperFamilySSF546311.65E-17741816No hitNo description
Gene3DG3DSA:3.10.580.104.0E-9753817No hitNo description
PROSITE profilePS513716.905762825IPR000644CBS domain
CDDcd022052.07E-13769890No hitNo description
SMARTSM001167.5769818IPR000644CBS domain
PROSITE profilePS5137112.35842903IPR000644CBS domain
SuperFamilySSF546313.64E-27843987No hitNo description
Gene3DG3DSA:3.10.580.101.5E-22844977No hitNo description
CDDcd046428.17E-39845976No hitNo description
PfamPF005717.5E-8846894IPR000644CBS domain
SMARTSM001162.6E-8846895IPR000644CBS domain
PfamPF005715.1E-10926975IPR000644CBS domain
PROSITE profilePS5137112.24926985IPR000644CBS domain
SMARTSM001162.1E-7929978IPR000644CBS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MEETKDEQVD HGGRVFEIEK GEDELPTTEK VPSSSSSPTG KESDDRNHIM FLKEDRLHAT  60
KAEMGEVREE NERLKTILGQ IIKGYQSLET KFFDIVQQEQ AKKSIEIPSA NHNHGVEESE  120
LVSLSLGMSA RERKKETKTN LSSEEKADDK IDEQGLALGL GCGFDGSNYT EPSDCRTNLS  180
SENSLEESKE DAKETWPPGK ITKSLNSKGG DGEVSPQPPA KRARVSVRAR CDAPTMNDGC  240
QWRKYGQKTA KGNPCPRAYY RCTVSPACPV RKQVQRCAED MSILVTTYEG THNHPLPVSA  300
TAMASTTSAA ASMLISGSST SDISSTVATN AAMNLHDLNF GLPMNSSTSR SLYYQQNPSI  360
LSTPSHPTIT LDLTAPSFNT SQIKPPSIFS SSSFGLSSYN KNPNPFNQSY LPKSNTTASS  420
SSWSSSSSNM LTDTLAKAIT SDPSFQSALV AAISSHVGAQ GGSAFLGSQT GGQHGLMKRG  480
EQLASASTSA RPTSSSHPNL HHHQKTSKCP QKPKALSLIS PKSSEVLFLI SLDTSSFPAP  540
DHMRITSRSL ASCSQEMAQP EKNSKILSCD AYFEAVQSKK RLPLSLQESL TAAFAQIPVS  600
SFPEVPGGKV IEIQGDTSIL DAVRILSEHN IMSAPVRNPE AETSSDWRGK YLGIIDYAAI  660
ILWVIENAEL AAVALSAGSA TAAGVGTGVV GALGAVAVGA TGPAAVAGLT AAAVGAAVAG  720
GMAADRSVAK DAPSAAGHLG KDFYKVLLEE EPFKSTTVQS IIQSYRWAPF LPVLLDSSML  780
TVLLLLSKYR LRNVPVVEPD KPYIKNFITQ TAIVRGLKQC SGRDWFDCIT ALPLSYFGLP  840
FMSYDEVITI KSDDLILEAF KRMKDNGIGA LPVVEGPERK LVGSVSIHHV RFLLLRPDLF  900
SDFRQLTVMD FMKTIGSVFP GFENSMVEPP LTCGPDDSFG SVIDNLASKS VHRIYVVEGD  960
DREVVGVVTL RDVISCFIYE PPNYFDNYMG IAKEMLETAT TATAPTAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22223297174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105603.10.0uncharacterized protein LOC109722126
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP925023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-70WRKY DNA-binding protein 72