PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005995.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 415aa    MW: 42896.1 Da    PI: 6.5434
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005995.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.3e-17287321135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG+++++ +l
  Aco005995.1 287 CLHCATEKTPQWRTGPMGPKTLCNACGVRFKSGRL 321
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.149281317IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-17281331IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-14282318IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-15283344No hitNo description
CDDcd002022.34E-13286333No hitNo description
PfamPF003204.0E-15287321IPR000679Zinc finger, GATA-type
PROSITE patternPS003440287312IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MEAAPECYHG GFYRAASGTM PQFVAEKKGT AASAAADNGF VVDDLLDFSN EEEDDDDAAA  60
AAAAPEVYGS AADDAATGNS SADSSTVTAV DSCNSSFSGG GGGGAGGYPH FSGELASQSF  120
GDNCLSGDLC EPQYEELAEL EWLSNFVEES AFSSDQDLQK LHLISGFKPS PSSSSSASAS  180
ASASASAATA AAAHHSPVPG KARSKRSRAA PCSWSSRLLV VSPTSAAASQ VTATAAAAPV  240
SSSESEITEI GGASAVTVAG KKASKPAKKK ENSGAAAAAA AGDGRRCLHC ATEKTPQWRT  300
GPMGPKTLCN ACGVRFKSGR LVPEYRPAAS PTFVLSKHSN SHRKVLELRR QKELQQLQLP  360
PPPPQQQQQH HLLHPRTAAA AVFDAAPPHS AADEFLIHHH HHHHHLGHEF RQLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105467.10.0GATA transcription factor 12 isoform X1
TrEMBLA0A199VYV50.0A0A199VYV5_ANACO; GATA transcription factor
STRINGXP_010249552.11e-117(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-61GATA transcription factor 9