PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006004.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

ERF

Protein Properties

Length: 158aa MW: 16405.6 Da PI: 10.2744

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006004.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.8	3.2e-19	44	94	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ ++r++lg+f t+e+Aa+a++aa+++ +g Aco006004.1 44 PSYRGVRMRA-WGKWVSEIREPRK---KTRIWLGTFPTPEMAARAHDAAALCVKG 94 57***998.******843...6********************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.22E-20	44	104	No hit	No description
Pfam	PF00847	7.6E-14	44	94	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-21	45	103	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.5E-32	45	103	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.13	45	102	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-36	45	108	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	46	57	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	68	84	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MTQSGGADSA EPGSKAMSPP SSGAATSPGA PTKRGRGAGS TRHPSYRGVR MRAWGKWVSE 60 IREPRKKTRI WLGTFPTPEM AARAHDAAAL CVKGPAAALN FPELAAALPR PATLAPRDVQ 120 AAAALAAAME EPGFASDQLW AVPDGCVPTV FESRLWD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-19	35	103	5	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004857	6e-80	AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBank	AP014958	6e-80	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	AY258281	6e-80	AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097734.1	1e-108	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	2e-49	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A199VY32	6e-58	A0A199VY32_ANACO; Dehydration-responsive element-binding protein 3
STRING	AT5G11590.1	9e-48	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11590.1	1e-31	ERF family protein

Link Out ? help Back to Top
Phytozome	Aco006004.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]