PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco006038.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

WRKY

Protein Properties

Length: 265aa MW: 29210.1 Da PI: 4.8915

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006038.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.4e-29	68	126	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ +Hnh+ Aco006038.1 68 SDPWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTTLVVTYSFDHNHP 126 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	31.617	62	128	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.8E-30	63	128	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	64	128	IPR003657	WRKY domain
SMART	SM00774	8.8E-34	67	127	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	69	126	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDGYYYSSDS PDDAAVPSPP GEPKPTSHPP PPPTKRSRRS VQKRVVSVPI AEADPSRGKG 60 AGESGPPSDP WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV DPTTLVVTYS 120 FDHNHPWPAP KNPHRPSSKR PARAGEEREP EAGRAGPDEP EEEEEEEVGA RGRFGDLMIG 180 AEFEWRAEEE DEAAVLLYGP MYGAALLPEE RGDSGRRAEE EDALFAGLGE LPECAVVFRH 240 RRGFGPEPEP EPEPEPEPWR SMNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-19	43	129	6	80	Disease resistance protein RRS1
5w3x_D	8e-19	43	129	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105327.1	0.0	probable WRKY transcription factor 65
Swissprot	Q9LP56	1e-57	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A199UDG9	1e-141	A0A199UDG9_ANACO; Putative WRKY transcription factor 65
STRING	Gorai.011G037500.1	9e-66	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7088	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	7e-40	WRKY DNA-binding protein 69

Link Out ? help Back to Top
Phytozome	Aco006038.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]