PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006154.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 233aa    MW: 26158.3 Da    PI: 8.4915
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006154.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1976129356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+ +++keq + Lee F++n++++ +++e LA+kl+L  rqV vWFqNrRa+ k
  Aco006154.1  76 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAAKLKLRPRQVEVWFQNRRARTK 129
                  67789***********************************************98 PP
2HD-ZIP_I/II123.21.3e-3976163290
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr +
  Aco006154.1  76 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAAKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELR-A 163
                  9*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-1856129IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1968132IPR009057Homeodomain-like
PROSITE profilePS5007117.29771131IPR001356Homeobox domain
SMARTSM003893.6E-1673135IPR001356Homeobox domain
CDDcd000869.87E-1574132No hitNo description
PfamPF000462.2E-1676129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PfamPF021836.3E-10131164IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.4E-23131174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MHVWLTEVAG AAAAANNNNN NNNNNVRELD MNQPASGGEE ECYYYFPAII CAGEREAEAE  60
EEEEEEDGGG SHHRPKKLRL SKEQSRLLEE SFRQNHTLNP KQKEALAAKL KLRPRQVEVW  120
FQNRRARTKL KQTEMECEYL KRCFGSLTEE NRRLQREVEE LRALRVAPPT VLSPHSRRPL  180
PASSLTMCPR CERVTASPSA APAQQPPRAA TRPSPTSSSA ALFRPRQPSA AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105648.11e-163homeobox-leucine zipper protein HOX3
SwissprotQ0JKX12e-91HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH382e-91HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A199VRQ31e-141A0A199VRQ3_ANACO; Homeobox-leucine zipper protein HOX3
STRINGLPERR01G20820.11e-94(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-54homeobox-leucine zipper protein 17