PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006191.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 241aa    MW: 24205.7 Da    PI: 8.4877
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006191.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20133167135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Aco006191.1 133 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 167
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.167127163IPR000679Zinc finger, GATA-type
SMARTSM004016.6E-20127178IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14128168No hitNo description
Gene3DG3DSA:3.30.50.103.2E-17131167IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.98E-12132164No hitNo description
PfamPF003205.4E-18133167IPR000679Zinc finger, GATA-type
PROSITE patternPS003440133158IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLHECGRPRS TCGLLGGTCG GGGGATSSSS SSFSISNLFP SYAPPTTSNS TGSSSGGEGE  60
GLSSYVDCTL SLGTPSTRHA GAGPGFGGPG PAQPPSSLQW DVMGRPNKQQ CCGGGGGSGG  120
FSKGNGGDAP RRCANCDTTS TPLWRNGPRG PKSLCNACGI RYKKEERRAA TSSAVPPPPP  180
PPLQQQWGCY GAAAAASKGA VSIAMYGDDG ADSWRLNAAA AAAQAPQFHV RDWPSLFQYN  240
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105576.11e-171GATA transcription factor 12-like
TrEMBLA0A199VEW31e-170A0A199VEW3_ANACO; GATA transcription factor 19
STRINGXP_008800719.18e-48(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.11e-25GATA transcription factor 19