PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006221.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 337aa    MW: 36881.8 Da    PI: 6.6147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006221.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33206263259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers+edp++v++tYeg+H+h+
  Aco006221.1 206 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSHEDPSIVITTYEGRHTHQ 263
                  8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-35190265IPR003657WRKY domain
SuperFamilySSF1182901.31E-29197265IPR003657WRKY domain
PROSITE profilePS5081131.617200265IPR003657WRKY domain
SMARTSM007748.4E-39205264IPR003657WRKY domain
PfamPF031061.3E-26206263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSQERGELYH HQHGHLFLNE MINSGGDLSC FFSHHEAMSV ADAAPFAGFA DYDYGAALSR  60
AAFGDVRCDE LGLFDAPPAK PELLIDVDAA IDYGAVVGRR HGLDVSIGGG GGGGDGGTGP  120
VTPNSSVSSS SSEAGGDEES GGRSKKDRIK EEEEEGGEEK QLQARGSDDQ GGEKSKKLVK  180
AKNKGEKRQR EPRFAFMTKS EVDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCSVKK  240
RVERSHEDPS IVITTYEGRH THQSPANLRG SSHFLAPSPS FRAQEFLNPS SHHHMSTNPT  300
MYLPISLPPP LQQLQVLPDY GLLQDIIPSF IHQNQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-28196266878Probable WRKY transcription factor 4
2lex_A8e-28196266878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020105446.10.0probable WRKY transcription factor 71
TrEMBLA0A199VFX60.0A0A199VFX6_ANACO; Putative WRKY transcription factor 28
STRINGXP_008798309.11e-101(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-50WRKY DNA-binding protein 28