PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006330.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 416aa    MW: 44209.9 Da    PI: 8.6593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.4e-114975127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C f++rtG C yG+rC+++H+p
  Aco006330.1 49 PGEPDCLFYLRTGSCGYGERCRYNHPP 75
                 5789*********************97 PP
2zf-CCCH33.85.6e-1198122327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++lC ++++tGtC++G+ Ck++H++
  Aco006330.1  98 QPLCEYYMKTGTCRFGPMCKYHHPR 122
                  79*********************96 PP
3zf-CCCH32.81.1e-10143168227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C+++++tG+Ck+ ++Ck++H++
  Aco006330.1 143 GEKDCSYYMKTGQCKFASSCKYHHPQ 168
                  7889********************97 PP
4zf-CCCH41.62e-13287313127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f++rtG CkyG+ Ck++H+p
  Aco006330.1 287 PGQPECQFYMRTGDCKYGAACKYNHPP 313
                  5789*********************97 PP
5zf-CCCH34.72.9e-11336358426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   +C ++a++G+Ck+G++CkF H+
  Aco006330.1 336 QPCTYYAQNGFCKFGPTCKFDHP 358
                  69********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.9714876IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-64875IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-55376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45474IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.70495123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-695122IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-795122IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-898122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5100122IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671141169IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5144169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.779286314IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-7286313IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-10288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5290313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4292313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216332360IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-7332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6334360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5336357IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8336358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MELYGRGAAA AAAGGGGGGE GARKEPETGL EESMWRLGLG ADSAFPERPG EPDCLFYLRT  60
GSCGYGERCR YNHPPDRGGT LAGAGRMGAA QYPERVGQPL CEYYMKTGTC RFGPMCKYHH  120
PRQGGGSLQP AMLNYYGYPL RPGEKDCSYY MKTGQCKFAS SCKYHHPQPS GVSLPSPTTT  180
IYPTVQTPLA SWQVGRPSVL PAGSYVSGSY GPVLFSPGVV PVQGWNPYPA PVSSVVSSGG  240
QQVVQAGPVY GLSNQPAVPS YTGSYVPLSP SAGSGGSQRE HKFPQRPGQP ECQFYMRTGD  300
CKYGAACKYN HPPEWSVKKT NCLLSPLGLP IRPGAQPCTY YAQNGFCKFG PTCKFDHPIG  360
TMSYSPSASS LSEMPIAPFP LGFSLTTLPP TSSSSSEFVK ESIPTQKILS KNSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6659661e-79KM665966.1 Ananas bracteatus clone 51169a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103473.10.0zinc finger CCCH domain-containing protein 6-like
SwissprotQ5NAW21e-157C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A199VKP50.0A0A199VKP5_ANACO; Zinc finger CCCH domain-containing protein 6
STRINGXP_008796231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-132C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]